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Australian Lead Zinc Polymetallic Tailings Consortium

A stratified microbial community from abandoned polymetallic mine tailings in Western Australia, characterized by vertical zonation of acidophilic and anaerobic organisms across steep pH and redox gradients. This system represents a naturally acidifying sulfidic tailings dump where oxidative weathering of Pb-Zn sulfide minerals drives extreme environmental heterogeneity and microhabitat specialization. The upper oxidized layer (pH 1.5-3.0) is dominated by iron- and sulfur-oxidizing acidophiles including Acidithiobacillus ferrooxidans (dual Fe/S oxidation) and Leptospirillum ferriphilum (specialized Fe oxidation), which generate ferric iron and sulfuric acid that mobilize lead, zinc, copper, and iron from sulfide minerals including galena (PbS), sphalerite (ZnS), and chalcopyrite (CuFeS₂). The intermediate chemocline exhibits dramatic pH transitions (pH 3-5) where Ferroplasma acidarmanus thrives in highly acidic microniches while facultative acidophiles transition to neutral conditions. The deeper sediment layer (pH 5-7) harbors anaerobic metal-reducing bacteria including Geobacter metallireducens that reduce ferric iron to ferrous iron using organic carbon, creating redox cycling between oxic and anoxic zones. Metagenome-assembled genomes (MAGs) reveal extensive microhabitat partitioning, with distinct populations specializing in surface oxidation, chemocline transitions, or deep anaerobic processes. Metal concentrations reach toxic levels (Pb: hundreds mg/kg, Zn: thousands mg/kg, Cu: hundreds mg/kg, Fe: up to 30% w/w), selecting for metal-resistant populations. This abandoned tailings system demonstrates natural biogeochemical cycling without active mining, with microbial communities driving ongoing metal mobilization (upper layers) and potential natural attenuation (deeper layers). The MAG-resolved metagenomics approach reveals cryptic microbial diversity including novel acidophilic lineages adapted to polymetallic stress, providing insights into bioremediation strategies and microbial evolution in extreme anthropogenic environments.

Taxonomy

Taxon Ontology ID Functional Roles Abundance
Acidithiobacillus ferrooxidans NCBITaxon:920
PRIMARY_DEGRADER
DOMINANT
Leptospirillum ferriphilum NCBITaxon:178606
PRIMARY_DEGRADER
DOMINANT
Ferroplasma acidarmanus NCBITaxon:97393
PRIMARY_DEGRADER CROSS_FEEDER
ABUNDANT
Geobacter metallireducens NCBITaxon:28232
SECONDARY_FERMENTER
COMMON
Sulfobacillus thermosulfidooxidans NCBITaxon:28034
PRIMARY_DEGRADER
RARE
Acidiphilium cryptum NCBITaxon:524
CROSS_FEEDER
COMMON

Ecological Interactions

Lead and Zinc Mobilization from Sulfide Minerals

MUTUALISM

Source Taxon: Acidithiobacillus ferrooxidans

Metabolites: galena (CHEBI:82328), sphalerite (CHEBI:82332), Fe(III) (CHEBI:29034), lead(2+) (CHEBI:49807), zinc(2+) (CHEBI:29105), sulfuric acid (CHEBI:26836)

Biological Processes:

Downstream Effects:
Stratified Iron Redox Cycling

Evidence

  • doi:10.1128/aem.02458-10 - SUPPORT (IN_VIVO)
    "Analysis of spatial and temporal variations in the microbial community in the abandoned tailings impoundment of a Pb-Zn mine revealed distinct microbial populations associated with the different oxidation stages of the tailings"
  • PMID:22092956 - SUPPORT (IN_VIVO)
    "Weathering of waste rock, high in S and Fe, had resulted in a varying elemental dispersal down a face of the tailings hill"

Stratified Iron Redox Cycling

COMMENSALISM

Source Taxon: Leptospirillum ferriphilum

Metabolites: Fe(II) (CHEBI:29033), Fe(III) (CHEBI:29034), ferrihydrite (CHEBI:82823)

Biological Processes:

Downstream Effects:
Lead and Zinc Mobilization from Sulfide Minerals

Evidence

  • doi:10.1016/j.jhazmat.2023.130774 - SUPPORT (IN_VIVO)
    "Specifically, key genes involved in sulfur and iron oxidation were significantly enriched in the surface tailings, whereas those associated with reductive nitrogen, sulfur, and iron processes were enriched in the deeper layers"
  • "DNA hypermethylation caused by environmental pollutants like cadmium (Cd) has already been demonstrated in many invertebrates, including earthworms"

Microhabitat Specialization Along pH Gradient

COMMENSALISM

Source Taxon: Ferroplasma acidarmanus

Metabolites: hydron (CHEBI:15378)

Biological Processes:

Evidence

  • doi:10.1128/aem.02883-07 - SUPPORT (IN_VIVO)
    "Phylotype richness in these communities decreased from 42 in the OS control to 24 in the moderately acidic samples and 8 in the extremely acidic tailing samples"
  • doi:10.1128/aem.00294-14 - SUPPORT (IN_VIVO)
    "Together, these results suggest that pH is primarily responsible for structuring whole communities in the extreme and heterogeneous mine tailings, although the diverse microbial taxa may respond differently to various environmental conditions."

Copper Mobilization and Toxicity Interactions

COMPETITION

Source Taxon: Acidithiobacillus ferrooxidans

Metabolites: chalcopyrite (CHEBI:50831), copper(2+) (CHEBI:29036)

Biological Processes:

Evidence

  • doi:10.3390/min14030255 - SUPPORT (IN_VITRO)
    "The study examined the solubilisation process using a mesophilic mixed bacterial culture, including Acidithiobacillus ferrooxidans (AF), Acidithiobacillus thiooxidans (AT), Leptospirillum ferrooxidans (LF), and the thermophilic species Sulfobacillus thermosulfidooxidans (ST)"
  • PMID:22092956 - SUPPORT (IN_VIVO)
    "Weathering of waste rock, high in S and Fe, had resulted in a varying elemental dispersal down a face of the tailings hill"

Environmental Factors

Factor Value Unit
pH Stratification 1.5-7.0 pH units (depth-dependent)
Lead Concentration 200-800 mg/kg solid phase; 5-50 mg/L dissolved
Zinc Concentration 2000-8000 mg/kg solid phase; 50-500 mg/L dissolved
Copper Concentration 300-1200 mg/kg solid phase; 20-150 mg/L dissolved
Iron Concentration Up to 30% % w/w solid phase; 1000-10000 mg/L dissolved
Oxygen Stratification Oxic to anoxic depth-dependent gradient
Arid Climate with Wetting-Drying Cycles Semi-arid climate classification
MAG Diversity and Specialization 100-200 estimated distinct MAG populations
Time Since Abandonment Decades years since mining cessation