An acid-producing bacterial consortium engineered to extract rare earth elements (REE) from tailings at the Bayan Obo mine in Inner Mongolia, China, the world's largest rare earth deposit. This functional bacterial consortium achieves exceptional REE recovery rates of 82-83% for the five main light rare earth elements (La, Ce, Pr, Nd, Sm) after 18 days of bioleaching using one-step or two-step processes. The tailings are iron extraction residues from medium-poor oxidized ores containing bastnaesite (REE(CO₃)F) and monazite as primary REE minerals. The consortium employs acid-producing bacteria including actinomycetes (Streptomyces sp.), autotrophic acidophiles (Acidithiobacillus ferrooxidans), and heterotrophic acidophiles (Acidiphilium cryptum) that work synergistically to mobilize REE through acidolysis and organic acid complexation. Key mechanisms include production of organic acids (citric, oxalic, lactic, pyruvic), siderophores, and complexing ligands that solubilize REE from carbonate-fluoride minerals. The two-step process (sequential inoculation with heterotrophs followed by autotrophs) achieves 83.51% recovery versus 82.78% for one-step (simultaneous inoculation), demonstrating synergistic enhancement through pH control and organic acid accumulation. This system represents a critical sustainable biotechnology for recovering strategic REE materials essential for clean energy technologies, permanent magnets, and electronics while remediating millions of tons of existing Bayan Obo tailings.
Taxonomy
| Taxon | Ontology ID | Functional Roles | Abundance |
|---|---|---|---|
| Acidithiobacillus ferrooxidans | NCBITaxon:920 |
PRIMARY_DEGRADER
|
ABUNDANT |
| Acidiphilium cryptum | NCBITaxon:524 |
SYNTROPHIC_PARTNER
SECONDARY_FERMENTER
|
ABUNDANT |
| Streptomyces | NCBITaxon:1883 |
PRIMARY_DEGRADER
CROSS_FEEDER
|
COMMON |
Ecological Interactions
Sulfuric Acid Generation and pH Reduction
COMMENSALISMSource Taxon: Acidithiobacillus ferrooxidans
Metabolites: sulfuric acid (CHEBI:26836), Fe(II) (CHEBI:29033), Fe(III) (CHEBI:29034)
Biological Processes:
- oxidation-reduction process (GO:0055114)
- sulfur compound metabolic process (GO:0006790)
Evidence
-
doi:10.1016/j.cej.2024.153492 - SUPPORT (IN_VITRO)"The development of efficient environmental cleanup materials is a crucial scientific and technological concern"
Organic Acid Production and REE Complexation
MUTUALISMSource Taxon: Acidiphilium cryptum
Metabolites: citric acid (CHEBI:30769), oxalic acid (CHEBI:16995), lactic acid (CHEBI:28358), pyruvic acid (CHEBI:32816)
Biological Processes:
- organic acid metabolic process (GO:0006082)
- carboxylic acid biosynthetic process (GO:0046394)
Evidence
-
doi:10.1016/j.chemogeo.2018.03.018 - SUPPORT (IN_VITRO)"actinobacterial strains secreted various organic acids, complexing ligands, and siderophores as dominant agents"
REE Dissolution from Bastnaesite and Monazite
MUTUALISMMetabolites: lanthanum(3+) (CHEBI:32359), cerium(3+) (CHEBI:32998), praseodymium(3+) (CHEBI:49648), neodymium(3+) (CHEBI:33372), samarium(3+) (CHEBI:33376)
Biological Processes:
- metal ion transport (GO:0030001)
Evidence
-
doi:10.1016/j.cej.2024.153492 - SUPPORT (IN_VITRO)"Since the groundbreaking work on Ti3C2Tx in 2011, there has been a huge growing interest in MXene-based composites developed through heterointerface engineering due to its high surface area, hydrophilicity, eco-friendliness, biocompatibility, easy functionalization, excellent thermal/mechanical properties, metal conductivity and rich electronic density"
-
doi:10.1016/j.cej.2024.153492 - SUPPORT (IN_VITRO)"rare earth elements in Bayan Obo RERT could be high-efficiently bioleached by acid bioleaching functional bacteria consortium"
Synergistic Two-Step Process Enhancement
MUTUALISMSource Taxon: Acidiphilium cryptum
Biological Processes:
- mutualism (GO:0044403)
Evidence
-
doi:10.1016/j.cej.2024.153492 - SUPPORT (IN_VITRO)"In the area of environmental remediation, MXene-based composites obtained through heterointerface engineering strategies have the ability to effectively remove and systematically monitor contaminants in comparison to virgin MXene, thanks to the synergistic effects and complementary benefits"
Environmental Factors
| Factor | Value | Unit |
|---|---|---|
| pH | 1.5-2.5 | pH units |
| Bioleaching Duration | 18 | days |
| Tailings Source and Composition | 15 million tons | metric tons |
| Target REE Elements | La, Ce, Pr, Nd, Sm | N/A |
| Temperature | ~30 | °C |
| Process Configuration | One-step vs. two-step | N/A |
| Mineral Targets | Bastnaesite and monazite | N/A |