KBase Models for Zahmeeth Original PLOS

Community ID CommunityMech:000037

Ecological State ENGINEERED

Environment laboratory environment
ENVO:01001405

Public KBase narrative centered on metabolic model editing, merged community modeling, and flux analyses for the Zahmeeth Original PLOS model set.

Taxonomy

Taxon	Ontology ID	Functional Roles	Abundance
Escherichia coli	NCBITaxon:562	CROSS_FEEDER	N/A
Pseudomonas fluorescens	NCBITaxon:294	CROSS_FEEDER	N/A
Bacteroides thetaiotaomicron	NCBITaxon:818	SYNTROPHIC_PARTNER	N/A
Klebsiella	NCBITaxon:570	CROSS_FEEDER	N/A

Taxon

Cross-feeding

Mutualism

Syntrophy

Competition

Commensalism

SYNTROPHY

Source Taxon: Bacteroides thetaiotaomicron

Target Taxon: Escherichia coli

doi:10.1101/2023.08.23.554558 - SUPPORT (COMPUTATIONAL)

"B. theta only grows in aerobic environments when coupled with E. coli"

CROSS_FEEDING

Metabolites: dextrin (CHEBI:28580)

doi:10.1101/2023.08.23.554558 - SUPPORT (COMPUTATIONAL)

"community models grew on dextrin despite that E. coli failed to grow as an isolate"

Dataset	Type	Repository	Accession
Primary publication bioRxiv preprint describing information flow through microbial community metabolic models.	OTHER	OTHER	doi:10.1101/2023.08.23.554558