Maize Root Simplified Bacterial Community

A representative 7-member bacterial community from maize rhizosphere, developed through selective iterations to model root-associated microbiome function. The community consists of Enterobacter cloacae AA4, Stenotrophomonas maltophilia AA1, Ochrobactrum pituitosum AA2, Herbaspirillum frisingense, Pseudomonas putida, Curtobacterium pusillum, and Chryseobacterium indologenes. This simplified community reproducibly assembles on root surfaces and provides biocontrol against Fusarium verticillioides, a phytopathogenic fungus. E. cloacae AA4 plays a keystone role, as its removal causes dramatic community composition changes.

Taxonomy

Taxon Ontology ID Functional Roles Abundance
Enterobacter cloacae AA4 — ontology label: Enterobacter cloacae NCBITaxon:550 · TaxonMech · TraitMech DOMINANT
  • PMID:28275097 - SUPPORT (IN_VITRO)
    "In this work, from the distinctive microbiota assembled by maize roots, through host-mediated selection, we obtained a greatly simplified synthetic bacterial community consisting of seven strains (Enterobacter cloacae, Stenotrophomonas maltophilia, Ochrobactrum pituitosum, Herbaspirillum frisingense, Pseudomonas putida, Curtobacterium pusillum, and Chryseobacterium indologenes) representing three of the four most dominant phyla found in maize roots"
  • PMID:28275097 - SUPPORT (IN_VIVO)
    "This result suggests that E. cloacae plays the role of keystone species in this model ecosystem"
Stenotrophomonas maltophilia AA1 — ontology label: Stenotrophomonas maltophilia NCBITaxon:40324 · TaxonMech · TraitMech ABUNDANT
  • PMID:28275097 - SUPPORT (IN_VITRO)
    "In this work, from the distinctive microbiota assembled by maize roots, through host-mediated selection, we obtained a greatly simplified synthetic bacterial community consisting of seven strains (Enterobacter cloacae, Stenotrophomonas maltophilia, Ochrobactrum pituitosum, Herbaspirillum frisingense, Pseudomonas putida, Curtobacterium pusillum, and Chryseobacterium indologenes) representing three of the four most dominant phyla found in maize roots"
Ochrobactrum pituitosum AA2 — ontology label: Brucella pituitosa NCBITaxon:571256 · TaxonMech · TraitMech ABUNDANT
  • PMID:28275097 - SUPPORT (IN_VITRO)
    "In this work, from the distinctive microbiota assembled by maize roots, through host-mediated selection, we obtained a greatly simplified synthetic bacterial community consisting of seven strains (Enterobacter cloacae, Stenotrophomonas maltophilia, Ochrobactrum pituitosum, Herbaspirillum frisingense, Pseudomonas putida, Curtobacterium pusillum, and Chryseobacterium indologenes) representing three of the four most dominant phyla found in maize roots"
Herbaspirillum frisingense NCBITaxon:92645 · TaxonMech · TraitMech COMMON
Pseudomonas putida NCBITaxon:303 · TaxonMech · TraitMech COMMON
Curtobacterium pusillum NCBITaxon:69373 · TaxonMech · TraitMech COMMON
Chryseobacterium indologenes NCBITaxon:253 · TaxonMech · TraitMech COMMON
Zea mays NCBITaxon:4577 · TaxonMech · TraitMech
PRIMARY_PRODUCER
N/A
  • PMID:28275097 - SUPPORT (IN_VITRO)
    "In this work, from the distinctive microbiota assembled by maize roots, through host-mediated selection, we obtained a greatly simplified synthetic bacterial community consisting of seven strains (Enterobacter cloacae, Stenotrophomonas maltophilia, Ochrobactrum pituitosum, Herbaspirillum frisingense, Pseudomonas putida, Curtobacterium pusillum, and Chryseobacterium indologenes) representing three of the four most dominant phyla found in maize roots"
Fusarium verticillioides NCBITaxon:117187 · TaxonMech · TraitMech N/A
  • PMID:28275097 - SUPPORT (IN_VIVO)
    "In planta and in vitro, this model community inhibited the phytopathogenic fungus Fusarium verticillioides, indicating a clear benefit to the host"

Ecological Interactions

The graph shows only explicitly linked interaction participants. Community members without an asserted participant link are omitted; membership alone does not imply an interaction.

Ecological interaction network for Maize Root Simplified Bacterial Community Bipartite graph where circles represent taxa and non-circular symbols represent interactions. Rare or untyped interactions share the Other symbol; exact curated types remain in the interaction details.
Taxon
Other

Host-Mediated Seven-Strain Root Assembly

Host-mediated selection yielded a seven-strain bacterial model that reproducibly assembled on axenic maize roots and retained all seven members through 15 days, despite changing relative and absolute abundances. This is conditional persistence in a gnotobiotic system, not asymptotic stability, universal host compatibility or direct bacterial facilitation of colonization. Community structure differed in unplanted MS agar, supporting host dependence. The canonical seven bacterial terms and maize host identify the studied system; source strain names and unresolved taxonomy mappings are preserved, not independently recertified.

Participating Taxa: Enterobacter cloacae AA4, Stenotrophomonas maltophilia AA1, Ochrobactrum pituitosum AA2, Herbaspirillum frisingense, Pseudomonas putida, Curtobacterium pusillum, Chryseobacterium indologenes, Zea mays

Biological Processes:

Evidence

  • PMID:28275097 - SUPPORT (IN_VIVO)
    "In this work, from the distinctive microbiota assembled by maize roots, through host-mediated selection, we obtained a greatly simplified synthetic bacterial community consisting of seven strains (Enterobacter cloacae, Stenotrophomonas maltophilia, Ochrobactrum pituitosum, Herbaspirillum frisingense, Pseudomonas putida, Curtobacterium pusillum, and Chryseobacterium indologenes) representing three of the four most dominant phyla found in maize roots"

E. cloacae Keystone Control of C. pusillum Takeover

Removing E. cloacae from the seven-strain inoculum caused C. pusillum overgrowth and loss or strong decline of the other five bacteria on maize roots by day 15. Selective-plate absolute CFUs distinguish both C. pusillum expansion and decreases of other members, not merely relative-composition dilution. In unplanted MS agar, the same removal did not produce C. pusillum takeover. This perturbation establishes a host-dependent community keystone effect, not direct pairwise competition between E. cloacae and C. pusillum or a resolved molecular route. Removing P. putida also increased C. pusillum, but less dramatically. All seven bacterial participants and maize define the comparison, including the omitted member in its control inoculum.

Participating Taxa: Enterobacter cloacae AA4, Stenotrophomonas maltophilia AA1, Ochrobactrum pituitosum AA2, Herbaspirillum frisingense, Pseudomonas putida, Curtobacterium pusillum, Chryseobacterium indologenes, Zea mays

Biological Processes:

Evidence

  • PMID:28275097 - SUPPORT (IN_VIVO)
    "Only the removal of E. cloacae led to the complete loss of the community, and C. pusillum took over"
  • PMID:28275097 - SUPPORT (IN_VIVO)
    "This result suggests that E. cloacae plays the role of keystone species in this model ecosystem"

Seven-Strain Suppression of Fusarium

The seven-strain community delayed visible Fusarium verticillioides colonization of maize seeds and reduced seedling-blight severity in laboratory assays; it also inhibited fungal growth on PDA and nutrient agar. Seed colonization was delayed, not eradicated: group differences became nonsignificant on day 10. All seven individual strains showed weaker protection to varying degrees, with E. cloacae strongest among them; the whole community performed better. This supports biocontrol without establishing every member as necessary, synergistic interaction, resource competition or host immune activation. Uninfected seed germination and root-growth tests did not show significant promotion. Participants include seven bacteria, the maize host for in-planta endpoints, and the fungal target, not a nine-member bacterial inoculum.

Participating Taxa: Enterobacter cloacae AA4, Stenotrophomonas maltophilia AA1, Ochrobactrum pituitosum AA2, Herbaspirillum frisingense, Pseudomonas putida, Curtobacterium pusillum, Chryseobacterium indologenes, Zea mays, Fusarium verticillioides

Evidence

  • PMID:28275097 - SUPPORT (IN_VIVO)
    "In planta and in vitro, this model community inhibited the phytopathogenic fungus Fusarium verticillioides, indicating a clear benefit to the host"

Knowledge gaps & discussions (1)

KNOWLEDGE_GAP OPEN How does the host-dependent keystone effect operate, and what mediates biocontrol?

The E. cloacae dropout intervention and absolute CFUs establish conditional community control without demonstrating direct pairwise competition. Unplanted controls show host dependence. Fungal inhibition and disease reduction remain positive observations, while niche competition and molecular/immune routes are hypotheses. No new structure added; preserve the prior two assembly-workflow arrow removals. #1580 tracks non-graph identity, temperature/protocol and metal claims; BioProtoc.2885 was not independently reviewed. Complete main text, embedded SI methods/captions and Table S1 read, not separate datasets, original figure pixels or raw data.

Attaches to: ecological_interactions#Host-Mediated Seven-Strain Root Assembly, ecological_interactions#E. cloacae Keystone Control of C. pusillum Takeover, ecological_interactions#Seven-Strain Suppression of Fusarium

Environmental Factors

Factor Value Unit
Target pathogen Fusarium verticillioides N/A
Keystone species Enterobacter cloacae AA4 N/A
Assembly dynamics reproducible colonization N/A
Agricultural application biocontrol for bioenergy crops N/A

Growth Media

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