An engineered monoculture bioplatform based on the mesophilic methylotrophic bacterium Methylobacterium extorquens AM1 for sustainable recovery of rare earth elements (REE) from electronic waste. This system represents a paradigm shift in critical materials recovery through non-acidic, green bioprocessing that eliminates the harsh chemical leaching typical of conventional REE extraction. M. extorquens naturally accumulates REE in intracellular polyphosphate granules during methanol metabolism, achieving baseline bioaccumulation of 3.2 mg Nd/g dry cell weight. Through metabolic engineering—overexpression of lanthanophore biosynthesis genes (mll operon under lac promoter control) and deletion of exopolyphosphatase (ppx)—REE bioaccumulation was enhanced to 202 mg Nd/g DCW (63-fold improvement), representing one of the highest microbial REE loading capacities reported. The platform achieves remarkable selectivity with 98% of accumulated metal being REE and 96.8% of that being neodymium, critical for permanent magnet recycling. The system operates at near-neutral pH (6.9), mesophilic temperature (29-30°C), and scales to 10-liter bioreactors with controlled organic acid supplementation (5-15 mM citrate). After bioleaching with citrate, 58.7 ppm REE are mobilized from electronic waste (magnet swarf), followed by cellular bioaccumulation and recovery. This consolidated platform integrates leaching, bioaccumulation, and recovery in a single organism, offering environmental advantages over acidic chemical processing while addressing circular economy needs for critical materials in clean energy technologies.
Taxonomy
| Taxon | Ontology ID | Functional Roles | Abundance |
|---|---|---|---|
| Methylobacterium extorquens | NCBITaxon:408 |
PRIMARY_DEGRADER
|
DOMINANT |
Ecological Interactions
Organic Acid-Mediated REE Bioleaching
COMMENSALISMSource Taxon: Methylobacterium extorquens
Metabolites: citric acid (CHEBI:30769), gluconic acid (CHEBI:33198), oxalic acid (CHEBI:16995), neodymium(3+) (CHEBI:33372)
Biological Processes:
- organic acid metabolic process (GO:0006082)
Evidence
-
PMID:38150661 - SUPPORT (IN_VITRO)"The addition of organic acids increases REE leaching in a nonspecific manner"
Lanthanophore-Mediated REE Bioaccumulation
COMMENSALISMSource Taxon: Methylobacterium extorquens
Metabolites: neodymium(3+) (CHEBI:33372), praseodymium(3+) (CHEBI:49648), dysprosium(3+) (CHEBI:49782)
Biological Processes:
- metal ion transport (GO:0030001)
- cellular response to metal ion (GO:0071248)
Evidence
-
PMID:38150661 - SUPPORT (IN_VITRO)"REEs are stored intracellularly in polyphosphate granules, and genetic engineering to eliminate exopolyphosphatase activity increases metal accumulation, confirming the link between phosphate metabolism and biological REE use"
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PMID:38150661 - SUPPORT (IN_VITRO)"In cell samples, 98.0% of the accumulated metal was REE, 96.8% of which was Nd"
Polyphosphate Granule REE Sequestration
COMMENSALISMSource Taxon: Methylobacterium extorquens
Metabolites: neodymium(3+) (CHEBI:33372), polyphosphate (CHEBI:59905)
Biological Processes:
- polyphosphate catabolic process (GO:0006799)
Evidence
-
PMID:38150661 - SUPPORT (IN_VITRO)"REEs are stored intracellularly in polyphosphate granules, and genetic engineering to eliminate exopolyphosphatase activity increases metal accumulation, confirming the link between phosphate metabolism and biological REE use"
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PMID:38150661 - SUPPORT (IN_VITRO)"With ppx deletion: 202 mg Nd/g DW"
Methanol-Powered REE Acquisition Metabolism
MUTUALISMSource Taxon: Methylobacterium extorquens
Metabolites: methanol (CHEBI:17790), neodymium(3+) (CHEBI:33372), formaldehyde (CHEBI:16842)
Biological Processes:
- methanol metabolic process (GO:0006118)
Evidence
-
PMID:38150661 - SUPPORT (IN_VITRO)"The mesophilic methylotrophic bacterium Methylobacterium extorquens AM1 was previously shown to grow using electronic waste by naturally acquiring REEs to power methanol metabolism"
Environmental Factors
| Factor | Value | Unit |
|---|---|---|
| pH | 6.9 | pH units |
| Temperature | 29-30 | °C |
| Bioreactor Scale | 10 | liters |
| Medium Composition | HyphoMOD minimal medium | N/A |
| REE Bioaccumulation Capacity | 202 | mg Nd/g dry cell weight |
| REE Selectivity and Purity | 98% | % REE purity |
| Substrate E-waste Composition | Nd-Fe-B magnet swarf | N/A |
| Citrate Leaching Efficiency | 58.7 | ppm REE leached |
| Genetic Engineering Strategy | mll overexpression + ppx deletion | N/A |
| Consolidated Bioprocessing | Integrated leaching-accumulation-recovery | N/A |