Phylogenetically Diverse Denitrifying SynCom

Community ID CommunityMech:000113

Ecological State ENGINEERED

Environment laboratory bioreactor
ENVO:01001405

Closely related and distantly related synthetic denitrifying communities used to test how phylogenetic diversity affects denitrification and stability.

Taxonomy

Taxon	Ontology ID	Functional Roles	Abundance
Shewanella sp.	NCBITaxon:22	CROSS_FEEDER	N/A
PMID:37207729 - SUPPORT (IN_VITRO) "we selected denitrifiers based on their phylogenetic distance to construct two groups of synthetic denitrifying communities: one closely related (CR) group with all strains from the genus Shewanella and the other distantly related (DR) group with all constituents from different genera."
Paracoccus denitrificans	NCBITaxon:266	CROSS_FEEDER	N/A
PMID:37207729 - SUPPORT (IN_VITRO) "we selected denitrifiers based on their phylogenetic distance to construct two groups of synthetic denitrifying communities: one closely related (CR) group with all strains from the genus Shewanella and the other distantly related (DR) group with all constituents from different genera."

Ecological Interactions

Taxon

Cross-feeding

Mutualism

Syntrophy

Competition

Commensalism

Niche partitioning

Colonization facilitation

Strain competition

Predation

Phylogenetic Complementarity in Denitrification

NICHE_PARTITIONING

Evidence

PMID:37207729 - SUPPORT (IN_VITRO)

"we selected denitrifiers based on their phylogenetic distance to construct two groups of synthetic denitrifying communities: one closely related (CR) group with all strains from the genus Shewanella and the other distantly related (DR) group with all constituents from different genera."

Environmental Factors

Factor	Value	Unit
defined synthetic community design	Closely related communities used Shewanella strains; distantly related communities used constituents from different genera.	N/A
PMID:37207729 - SUPPORT (IN_VITRO) "we selected denitrifiers based on their phylogenetic distance to construct two groups of synthetic denitrifying communities: one closely related (CR) group with all strains from the genus Shewanella and the other distantly related (DR) group with all constituents from different genera."