methylocaldum_marinum_medium

CultureMech:000971 bacterial DEFINED SOLID_AGAR
Original name: METHYLOCALDUM MARINUM MEDIUM

Overview

External ontology
mediadive.medium:1501 (source link unavailable) — METHYLOCALDUM MARINUM MEDIUM
Applications
  • Microbial cultivation
Notes
Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1501.pdf

Composition

flowchart LR
    CultureMech_000971["methylocaldum_marinum_medium"]
    ing0_NaCl["NaCl"]
    CultureMech_000971 --> ing0_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing0_NaCl -.-> CHEBI_26710
    ing1_Agar["Agar"]
    CultureMech_000971 --> ing1_Agar
    CHEBI_2509["CHEBI:2509"]
    ing1_Agar -.-> CHEBI_2509
    ing2_Na2_EDTA["Na2-EDTA"]
    CultureMech_000971 --> ing2_Na2_EDTA
    CHEBI_64734["CHEBI:64734"]
    ing2_Na2_EDTA -.-> CHEBI_64734
    ing3_CuSO4_x_5_H2O["CuSO4 x 5 H2O"]
    CultureMech_000971 --> ing3_CuSO4_x_5_H2O
    CHEBI_31440["CHEBI:31440"]
    ing3_CuSO4_x_5_H2O -.-> CHEBI_31440
    ing4_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_000971 --> ing4_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing4_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing5_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
    CultureMech_000971 --> ing5_ZnSO4_x_7_H2O
    CHEBI_32312["CHEBI:32312"]
    ing5_ZnSO4_x_7_H2O -.-> CHEBI_32312
    ing6_H3BO3["H3BO3"]
    CultureMech_000971 --> ing6_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing6_H3BO3 -.-> CHEBI_33118
    ing7_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_000971 --> ing7_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing7_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing8_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_000971 --> ing8_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing8_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing9_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_000971 --> ing9_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing9_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing10_Na2HPO4_x_12_H2O["Na2HPO4 x 12 H2O"]
    CultureMech_000971 --> ing10_Na2HPO4_x_12_H2O
    CHEBI_34683["CHEBI:34683"]
    ing10_Na2HPO4_x_12_H2O -.-> CHEBI_34683
    ing11_KH2PO4["KH2PO4"]
    CultureMech_000971 --> ing11_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing11_KH2PO4 -.-> CHEBI_63036
    ing12_KNO3["KNO3"]
    CultureMech_000971 --> ing12_KNO3
    CHEBI_63043["CHEBI:63043"]
    ing12_KNO3 -.-> CHEBI_63043
    ing13_MgSO4_x_6_H2O["MgSO4 x 6 H2O"]
    CultureMech_000971 --> ing13_MgSO4_x_6_H2O
    CHEBI_32599["CHEBI:32599"]
    ing13_MgSO4_x_6_H2O -.-> CHEBI_32599
    ing14_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_000971 --> ing14_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing14_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing15_Fe_III__EDTA["Fe(III)-EDTA"]
    CultureMech_000971 --> ing15_Fe_III__EDTA
    CHEBI_30729["CHEBI:30729"]
    ing15_Fe_III__EDTA -.-> CHEBI_30729
    ing16_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_000971 --> ing16_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing16_Na2MoO4_x_2_H2O -.-> CHEBI_75213

Ingredients (17)

# Ingredient Concentration Ontology Notes
1 NaCl
Cl.Na 58.443 g/mol
18 G_PER_L CHEBI:26710
sodium chloride
2 Agar 15 G_PER_L CHEBI:2509
agar
(for solid medium)
3 Na2-EDTA
C10H14N2O8.2Na 336.208 g/mol
0.25 G_PER_L CHEBI:64734
EDTA disodium salt (anhydrous)
4 CuSO4 x 5 H2O
Cu.5H2O.O4S 249.684 g/mol
0.2 G_PER_L CHEBI:31440
copper(II) sulfate pentahydrate
5 FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
0.5 G_PER_L CHEBI:75836
iron(2+) sulfate heptahydrate
6 ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
0.4 G_PER_L CHEBI:32312
zinc sulfate heptahydrate
7 H3BO3
H3BO3 61.833 g/mol
0.015 G_PER_L CHEBI:33118
boric acid
8 CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
0.05 G_PER_L CHEBI:53503
cobalt chloride hexahydrate
9 MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
0.02 G_PER_L CHEBI:86368
manganese(II) chloride tetrahydrate
10 NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
0.01 G_PER_L CHEBI:34887
nickel dichloride
11 Na2HPO4 x 12 H2O
HO4P.2Na 141.958 g/mol
71.6 G_PER_L CHEBI:34683
disodium hydrogenphosphate
12 KH2PO4
H2O4P.K 136.084 g/mol
26 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
13 KNO3
K.NO3 101.102 g/mol
10 G_PER_L CHEBI:63043
potassium nitrate
14 MgSO4 x 6 H2O
Mg.O4S 120.368 g/mol
10 G_PER_L CHEBI:32599
magnesium sulfate
15 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
2 G_PER_L CHEBI:86158
calcium chloride dihydrate
16 Fe(III)-EDTA
C10H12N2O8.Fe 344.057 g/mol
38 G_PER_L CHEBI:30729
ethylenediaminetetraacetatoferrate(1-)
17 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
0.26 G_PER_L CHEBI:75213
sodium molybdate dihydrate

Preparation

  1. Prepare the growth medium as follows:
  2. Dilute 100 ml solution 1 to 1 litre with 2% NaCl and then add 1 ml of solution 3, 1 ml of the trace elements, and 0.1 ml of solution 2. If solid media is required add 1.5% agar. Dispense the medium into the growth vessels. If using sealed vessels it is appropriate to add 25% methane to the gas phase and autoclave at 121C (15psi) for 15 minutes. Autoclave the phosphate buffer separately. When the growth medium is cool 10 ml/l of the phosphate buffer is added - if too warm the phosphate will precipitate. Liquid cultures should be grown with shaking.
  3. May be stored at 4°C in the dark
  4. Dissolve in about 800 ml of water, adjust the pH to 6.8 and make up to 1 litre.
  5. Dissolve the ingredients listed above (in that order) in about 700 ml of 2% NaCl, and then make up to 1 litre with 2% NaCl.

Target organisms

No target organisms are recorded.

Provenance

Merged from 1 source record.

TimestampCuratorActionNotes
2026-01-26T17:53:14.637791Z mediadive-import Imported from MediaDive Source: DSMZ, ID: 1501
2026-03-13T06:19:00.069146Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:000971
2026-03-17T06:30:40.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:11.646720+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "METHYLOCALDUM MARINUM MEDIUM" to "methylocaldum_marinum_medium" for consistent matching
2026-06-05T07:41:33.038060+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 16 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:37:35.507441+00:00 primary-term-regrounding-v1.0 Re-grounded wrong primary term id (OAK-verified) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-06-10T07:47:07.523388+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:05:44.639968+00:00 merge_recipes.py MERGED_RECIPES merged 1 source recipe(s) on fingerprint 9f95119583aa021598724f2a774e5fc191a0577a24c0cc722ff011c7dd6e1311