Overview
- External ontology
- mediadive.medium:1630c (source link unavailable) — modified Nitrosospaera medium
- Applications
-
- Microbial cultivation
- pH
- 7.5
- High-metal flag
- True
- Notes
- Source: DSMZ
Composition
flowchart LR
CultureMech_001113["modified_nitrosospaera_medium"]
ing0_NaCl["NaCl"]
CultureMech_001113 --> ing0_NaCl
CHEBI_26710["CHEBI:26710"]
ing0_NaCl -.-> CHEBI_26710
ing1_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
CultureMech_001113 --> ing1_MgCl2_x_6_H2O
CHEBI_86345["CHEBI:86345"]
ing1_MgCl2_x_6_H2O -.-> CHEBI_86345
ing2_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_001113 --> ing2_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing2_CaCl2_x_2_H2O -.-> CHEBI_86158
ing3_KH2PO4["KH2PO4"]
CultureMech_001113 --> ing3_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing3_KH2PO4 -.-> CHEBI_63036
ing4_KCl["KCl"]
CultureMech_001113 --> ing4_KCl
CHEBI_32588["CHEBI:32588"]
ing4_KCl -.-> CHEBI_32588
ing5_Na2SO4["Na2SO4"]
CultureMech_001113 --> ing5_Na2SO4
CHEBI_32149["CHEBI:32149"]
ing5_Na2SO4 -.-> CHEBI_32149
ing6_Double_distilled_water["Double distilled water"]
CultureMech_001113 --> ing6_Double_distilled_water
CHEBI_15377["CHEBI:15377"]
ing6_Double_distilled_water -.-> CHEBI_15377
ing7_HCl["HCl"]
CultureMech_001113 --> ing7_HCl
CHEBI_17883["CHEBI:17883"]
ing7_HCl -.-> CHEBI_17883
ing8_H3BO3["H3BO3"]
CultureMech_001113 --> ing8_H3BO3
CHEBI_33118["CHEBI:33118"]
ing8_H3BO3 -.-> CHEBI_33118
ing9_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_001113 --> ing9_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing9_MnCl2_x_4_H2O -.-> CHEBI_86368
ing10_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_001113 --> ing10_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing10_CoCl2_x_6_H2O -.-> CHEBI_53503
ing11_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_001113 --> ing11_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing11_NiCl2_x_6_H2O -.-> CHEBI_34887
ing12_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_001113 --> ing12_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing12_CuCl2_x_2_H2O -.-> CHEBI_86318
ing13_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_001113 --> ing13_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing13_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing14_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_001113 --> ing14_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing14_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing15_NaOH["NaOH"]
CultureMech_001113 --> ing15_NaOH
CHEBI_32145["CHEBI:32145"]
ing15_NaOH -.-> CHEBI_32145
ing16_HEPES["HEPES"]
CultureMech_001113 --> ing16_HEPES
CHEBI_46756["CHEBI:46756"]
ing16_HEPES -.-> CHEBI_46756
ing17_FeNa_EDTA["FeNa-EDTA"]
CultureMech_001113 --> ing17_FeNa_EDTA
ing18_NaHCO3["NaHCO3"]
CultureMech_001113 --> ing18_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing18_NaHCO3 -.-> CHEBI_32139
ing19_NH4Cl["NH4Cl"]
CultureMech_001113 --> ing19_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing19_NH4Cl -.-> CHEBI_31206
ing20_Sodium_pyruvate["Sodium pyruvate"]
CultureMech_001113 --> ing20_Sodium_pyruvate
CHEBI_50144["CHEBI:50144"]
ing20_Sodium_pyruvate -.-> CHEBI_50144
Ingredients (21)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
NaCl
Cl.Na 58.443 g/mol
|
1 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 2 |
MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
|
0.4 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
|
| 3 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.1 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 4 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.2 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 5 |
KCl
Cl.K 74.551 g/mol
|
0.5 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 6 |
Na2SO4
2Na.O4S 142.043 g/mol
|
0.05 G_PER_L |
CHEBI:32149
sodium sulfate
|
|
| 7 |
Double distilled water
H2O 18.015 g/mol
|
3150.0 G_PER_L |
CHEBI:15377
water
|
[Merged 6 duplicates: 1000.0, 1000.0, 1000.0, 50.0, 50.0, 50.0] |
| 8 |
HCl
HCl 36.461 g/mol
|
3.646 G_PER_L |
CHEBI:17883
hydrogen chloride
|
|
| 9 |
H3BO3
H3BO3 61.833 g/mol
|
0.03 G_PER_L |
CHEBI:33118
boric acid
|
|
| 10 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.1 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 11 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.19 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 12 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.024 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 13 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.002 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 14 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
0.144 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 15 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.036 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 16 |
NaOH
HO.Na 39.997 g/mol
|
24 G_PER_L |
CHEBI:32145
sodium hydroxide
|
|
| 17 | HEPES | 238.4 G_PER_L |
CHEBI:46756
HEPES
|
|
| 18 | FeNa-EDTA | 2.753 G_PER_L | ||
| 19 |
NaHCO3
CHO3.Na 84.006 g/mol
|
84 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 20 |
NH4Cl
Cl.H4N 53.492 g/mol
|
53.4 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 21 |
Sodium pyruvate
C3H3O3.Na 110.044 g/mol
|
110 G_PER_L |
CHEBI:50144
sodium pyruvate
|
Preparation
- Incubate all used glass ware and magnetic stirring rods in 0.1 M HCl and rinse 3x with double distilled water to remove residual detergents (always check visual for soap bubbles).
- Autoclave the Basic-FWM and cool to room temperature. This medium should be free of any precipitations!
- Aseptically, add per L of BASIC-FWM the following solutions from sterile stocks (do not store complemented FWM): - Trace element solution (Nitrososphaera) - FeNaEDTA solution - NaHCO3 solution - HEPES buffer solution - NH4Cl solution - Sodiumpyruvate solution
- Adjust pH to 7.5.
- This solution contains no iron! Sterilise by autoclaving or filtration (0.2 µm) and store in the dark at 4 °C.
- Fist dissolve NaOH in ca 600 ml water, then add HEPES, adjust pH to 7.5 and fill up to 1000 ml volume.
- Sterilise by filtration (0.2 µm) and store in the dark at 4 °C.
- Dissolve 4.2 g of NaHCO3 in 50 mL Double distilled water (use a small beaker with stirring rod to dissolve) and sterilize by filtration (0.2 µm) in the laminar flow hood. Store in a sterile 50 mL falcon tube at 4 °C. Avoid high headspace to liquid ratios to ensure stable concentration.
- Dissolve 2.67 g ammonium chloride in 50 mL Double distilled water.
- Filtrate (0.2 µm).
- Dissolve 5.5 g in 50 mL and filter it through 0.2 µm sterile filter in a sterile falcon tube. Store at 4 °C
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- modified_nitrosospaera_medium (CultureMech:001113)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:15.058252Z | mediadive-import | Imported from MediaDive | Source: DSMZ, ID: 1630c |
| 2026-03-13T03:08:45.225218Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 5 duplicate ingredient(s) |
| 2026-03-13T06:19:01.293950Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:001113 |
| 2026-03-17T06:29:48.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:12.996873+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "modified Nitrosospaera medium" to "modified_nitrosospaera_medium" for consistent matching |
| 2026-06-05T07:41:37.515076+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 20 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:47:08.879685+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:49.310577+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint 3720de6166db45db0ef76f4e7bdc3af617de1682ca4871560089dea507dc9652 |