aromatoleum_medium

CultureMech:001192 bacterial DEFINED LIQUID
Original name: AROMATOLEUM MEDIUM

Overview

External ontology
mediadive.medium:1712 (source link unavailable) — AROMATOLEUM MEDIUM
Applications
  • Microbial cultivation
Notes
Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1712.pdf

Composition

flowchart LR
    CultureMech_001192["aromatoleum_medium"]
    ing0_KH2PO4["KH2PO4"]
    CultureMech_001192 --> ing0_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing0_KH2PO4 -.-> CHEBI_63036
    ing1_NH4Cl["NH4Cl"]
    CultureMech_001192 --> ing1_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing1_NH4Cl -.-> CHEBI_31206
    ing2_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_001192 --> ing2_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing2_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing3_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_001192 --> ing3_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing3_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing4_NaNO3["NaNO3"]
    CultureMech_001192 --> ing4_NaNO3
    CHEBI_63005["CHEBI:63005"]
    ing4_NaNO3 -.-> CHEBI_63005
    ing5_Na2_EDTA["Na2-EDTA"]
    CultureMech_001192 --> ing5_Na2_EDTA
    CHEBI_64734["CHEBI:64734"]
    ing5_Na2_EDTA -.-> CHEBI_64734
    ing6_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_001192 --> ing6_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing6_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing7_H3BO3["H3BO3"]
    CultureMech_001192 --> ing7_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing7_H3BO3 -.-> CHEBI_33118
    ing8_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_001192 --> ing8_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing8_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing9_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_001192 --> ing9_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing9_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing10_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_001192 --> ing10_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing10_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing11_CuSO4_x_5_H2O["CuSO4 x 5 H2O"]
    CultureMech_001192 --> ing11_CuSO4_x_5_H2O
    CHEBI_31440["CHEBI:31440"]
    ing11_CuSO4_x_5_H2O -.-> CHEBI_31440
    ing12_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
    CultureMech_001192 --> ing12_ZnSO4_x_7_H2O
    CHEBI_32312["CHEBI:32312"]
    ing12_ZnSO4_x_7_H2O -.-> CHEBI_32312
    ing13_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_001192 --> ing13_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing13_Na2MoO4_x_2_H2O -.-> CHEBI_75213
    ing14_Na2HPO4_NaH2PO4_buffer["Na2HPO4-NaH2PO4 buffer"]
    CultureMech_001192 --> ing14_Na2HPO4_NaH2PO4_buffer
    ing15_4_Aminobenzoic_Acid["4-Aminobenzoic Acid"]
    CultureMech_001192 --> ing15_4_Aminobenzoic_Acid
    CHEBI_30753["CHEBI:30753"]
    ing15_4_Aminobenzoic_Acid -.-> CHEBI_30753
    ing16_D_____biotin["D-(+)-biotin"]
    CultureMech_001192 --> ing16_D_____biotin
    CHEBI_15956["CHEBI:15956"]
    ing16_D_____biotin -.-> CHEBI_15956
    ing17_Nicotinic_acid["Nicotinic acid"]
    CultureMech_001192 --> ing17_Nicotinic_acid
    CHEBI_15940["CHEBI:15940"]
    ing17_Nicotinic_acid -.-> CHEBI_15940
    ing18_Calcium_D_____pantothenate["Calcium D-(+)-pantothenate"]
    CultureMech_001192 --> ing18_Calcium_D_____pantothenate
    CHEBI_31345["CHEBI:31345"]
    ing18_Calcium_D_____pantothenate -.-> CHEBI_31345
    ing19_Pyridoxal_hydrochloride["Pyridoxal hydrochloride"]
    CultureMech_001192 --> ing19_Pyridoxal_hydrochloride
    CHEBI_131529["CHEBI:131529"]
    ing19_Pyridoxal_hydrochloride -.-> CHEBI_131529
    ing20_DL_alpha_lipoic_acid["DL-alpha-lipoic acid"]
    CultureMech_001192 --> ing20_DL_alpha_lipoic_acid
    CHEBI_16494["CHEBI:16494"]
    ing20_DL_alpha_lipoic_acid -.-> CHEBI_16494
    ing21_Folic_acid["Folic acid"]
    CultureMech_001192 --> ing21_Folic_acid
    CHEBI_27470["CHEBI:27470"]
    ing21_Folic_acid -.-> CHEBI_27470
    ing22_2_Mercaptoethanesulfonic_acid["2-Mercaptoethanesulfonic acid"]
    CultureMech_001192 --> ing22_2_Mercaptoethanesulfonic_acid
    CHEBI_17905["CHEBI:17905"]
    ing22_2_Mercaptoethanesulfonic_acid -.-> CHEBI_17905
    ing23_Cyanocobalamine["Cyanocobalamine"]
    CultureMech_001192 --> ing23_Cyanocobalamine
    CHEBI_17439["CHEBI:17439"]
    ing23_Cyanocobalamine -.-> CHEBI_17439
    ing24_Double_distilled_water["Double distilled water"]
    CultureMech_001192 --> ing24_Double_distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing24_Double_distilled_water -.-> CHEBI_15377
    ing25_NaHCO3["NaHCO3"]
    CultureMech_001192 --> ing25_NaHCO3
    CHEBI_32139["CHEBI:32139"]
    ing25_NaHCO3 -.-> CHEBI_32139
    ing26_Ascorbic_acid["Ascorbic acid"]
    CultureMech_001192 --> ing26_Ascorbic_acid
    CHEBI_22652["CHEBI:22652"]
    ing26_Ascorbic_acid -.-> CHEBI_22652
    ing27_Sodiumbenzoate["Sodiumbenzoate"]
    CultureMech_001192 --> ing27_Sodiumbenzoate
    CHEBI_113455["CHEBI:113455"]
    ing27_Sodiumbenzoate -.-> CHEBI_113455

Ingredients (28)

# Ingredient Concentration Ontology Notes
1 KH2PO4
H2O4P.K 136.084 g/mol
0.526316 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
2 NH4Cl
Cl.H4N 53.492 g/mol
0.315789 G_PER_L CHEBI:31206
ammonium chloride
3 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
0.526316 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
4 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.105263 G_PER_L CHEBI:86158
calcium chloride dihydrate
5 NaNO3
NO3.Na 84.994 g/mol
0.631579 G_PER_L CHEBI:63005
sodium nitrate
6 Na2-EDTA
C10H14N2O8.2Na 336.208 g/mol
5.2 G_PER_L CHEBI:64734
EDTA disodium salt (anhydrous)
7 FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
2.1 G_PER_L CHEBI:75836
iron(2+) sulfate heptahydrate
8 H3BO3
H3BO3 61.833 g/mol
0.03 G_PER_L CHEBI:33118
boric acid
9 MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
0.1 G_PER_L CHEBI:86368
manganese(II) chloride tetrahydrate
10 CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
0.19 G_PER_L CHEBI:53503
cobalt chloride hexahydrate
11 NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
0.024 G_PER_L CHEBI:34887
nickel dichloride
12 CuSO4 x 5 H2O
Cu.5H2O.O4S 249.684 g/mol
0.029 G_PER_L CHEBI:31440
copper(II) sulfate pentahydrate
13 ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
0.144 G_PER_L CHEBI:32312
zinc sulfate heptahydrate
14 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
0.036 G_PER_L CHEBI:75213
sodium molybdate dihydrate
15 Na2HPO4-NaH2PO4 buffer 1820 G_PER_L (25 mM, pH 7.1)
16 4-Aminobenzoic Acid
C7H7NO2 137.138 g/mol
0.04 G_PER_L CHEBI:30753
4-aminobenzoic acid
17 D-(+)-biotin
C10H16N2O3S 244.316 g/mol
0.01 G_PER_L CHEBI:15956
biotin
18 Nicotinic acid
C6H5NO2 123.111 g/mol
0.1 G_PER_L CHEBI:15940
nicotinic acid
19 Calcium D-(+)-pantothenate
2C9H16NO5.Ca 476.536 g/mol
0.05 G_PER_L CHEBI:31345
Calcium pantothenate
20 Pyridoxal hydrochloride
C8H9NO3.HCl 203.625 g/mol
0.15 G_PER_L CHEBI:131529
pyridoxal hydrochloride
21 DL-alpha-lipoic acid
C8H14O2S2 206.332 g/mol
0.015 G_PER_L CHEBI:16494
lipoic acid
22 Folic acid
C19H19N7O6 441.404 g/mol
0.04 G_PER_L CHEBI:27470
folic acid
23 2-Mercaptoethanesulfonic acid
C2H6O3S2 142.201 g/mol
0.25 G_PER_L CHEBI:17905
coenzyme M
(sodium salt)
24 Cyanocobalamine
C63H88CoN14O14P 1355.388 g/mol
0.05 G_PER_L CHEBI:17439
cyanocob(III)alamin
25 Double distilled water
H2O 18.015 g/mol
1250.0 G_PER_L CHEBI:15377
water
[Merged 4 duplicates: 50.0, 1000.0, 100.0, 100.0]
26 NaHCO3
CHO3.Na 84.006 g/mol
84 G_PER_L CHEBI:32139
sodium hydrogencarbonate
27 Ascorbic acid 176 G_PER_L CHEBI:22652
ascorbic acid
28 Sodiumbenzoate
C7H5O2.Na 144.105 g/mol
144 G_PER_L CHEBI:113455
sodium benzoate

Preparation

  1. The medium was autoclaved and removed from the autoclave at 85°C. Oxygen dissolution was prevented by exchanging the gas-phase with N2. The medium was complemented by addition of the following stock solutions:
  2. After adding bicarbonate the gas was changed from N2 to N2/CO2 (90/10 %, v/v) and the pH was adjusted to 7.2 - 7.4 with sterile 2 M HCL.
  3. The trace element solution was prepared by dissolving the salts in 800 mL warm H2Obidest
  4. NaOH was used to adjust the pH to 6.5. The solution was added up to 1000 mL with H2Obidest and autoclaved.
  5. The solution was filter-sterilized and stored at 4°C in the dark.
  6. The solution was filter-sterilized and stored at 4°C in the dark.
  7. The solution was dispensed in the required portions (40 mL per 1 L medium). The head space of the bottles was flushed with CO2. Saturation of CO2 in the solution was achieved by repeated flushing and shaking of the bottles. Finally, the bottles were sealed with rubber stoppers and aluminum crimps and autoclaved.
  8. In an ice bath ascorbic acid was dissolved in 80 mL anoxic H2Obidest (autoclaved, cooled under N2 atmosphere) while flushing with N2. The pH was adjusted to 7.0 with NaOH and the solution added up to 100 ml with anoxic H2Obidest. After filter-sterilization the solution was stored under N2 atmosphere in a special flask (which can be flushed with gas) at 4°C in the dark.
  9. The solution was filter-sterilized and stored at room temperature.

Target organisms

No target organisms are recorded.

Provenance

Merged from 1 source record.

TimestampCuratorActionNotes
2026-01-26T17:53:15.321290Z mediadive-import Imported from MediaDive Source: DSMZ, ID: 1712
2026-02-06T05:10:20.974573Z invalid-chebi-removal Removed 1 invalid CHEBI ID(s) Removed CHEBI IDs with invalid format (7+ digits) from MicrobeMediaParam source data
2026-03-13T03:08:51.767529Z data-quality-cleanup-v1.0 Data quality fixes Merged 3 duplicate ingredient(s)
2026-03-13T06:19:02.086114Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:001192
2026-03-17T06:29:55.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:13.886141+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "AROMATOLEUM MEDIUM" to "aromatoleum_medium" for consistent matching
2026-06-05T07:40:49.634222+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 25 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:53.503629+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:05:23.907250+00:00 merge_recipes.py MERGED_RECIPES merged 1 source recipe(s) on fingerprint c5cf649e30f0f555a6c830987c99d3c5234920006c4dfffef9fa238cc7c1dccd