Overview
- External ontology
- mediadive.medium:29 (source link unavailable) — PFENNIG'S MEDIUM II
- Applications
-
- Microbial cultivation
- pH range
- {'min': 6.8, 'max': 7.1}
- Notes
- Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium29.pdf
Composition
flowchart LR
CultureMech_001397["pfennigs_medium_ii"]
ing0_Na2S_x_9_H2O["Na2S x 9 H2O"]
CultureMech_001397 --> ing0_Na2S_x_9_H2O
CHEBI_76209["CHEBI:76209"]
ing0_Na2S_x_9_H2O -.-> CHEBI_76209
ing1_HCl["HCl"]
CultureMech_001397 --> ing1_HCl
CHEBI_17883["CHEBI:17883"]
ing1_HCl -.-> CHEBI_17883
ing2_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_001397 --> ing2_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing2_FeSO4_x_7_H2O -.-> CHEBI_75836
ing3_ZnCl2["ZnCl2"]
CultureMech_001397 --> ing3_ZnCl2
CHEBI_49976["CHEBI:49976"]
ing3_ZnCl2 -.-> CHEBI_49976
ing4_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_001397 --> ing4_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing4_MnCl2_x_4_H2O -.-> CHEBI_86368
ing5_H3BO3["H3BO3"]
CultureMech_001397 --> ing5_H3BO3
CHEBI_33118["CHEBI:33118"]
ing5_H3BO3 -.-> CHEBI_33118
ing6_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_001397 --> ing6_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing6_CoCl2_x_6_H2O -.-> CHEBI_53503
ing7_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_001397 --> ing7_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing7_CuCl2_x_2_H2O -.-> CHEBI_86318
ing8_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_001397 --> ing8_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing8_NiCl2_x_6_H2O -.-> CHEBI_34887
ing9_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_001397 --> ing9_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing9_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing10_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_001397 --> ing10_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing10_CaCl2_x_2_H2O -.-> CHEBI_86158
ing11_Yeast_extract["Yeast extract"]
CultureMech_001397 --> ing11_Yeast_extract
ing12_NaHCO3["NaHCO3"]
CultureMech_001397 --> ing12_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing12_NaHCO3 -.-> CHEBI_32139
ing13_Resazurin["Resazurin"]
CultureMech_001397 --> ing13_Resazurin
CHEBI_8806["CHEBI:8806"]
ing13_Resazurin -.-> CHEBI_8806
ing14_Ammonium_chloride["Ammonium chloride"]
CultureMech_001397 --> ing14_Ammonium_chloride
CHEBI_31206["CHEBI:31206"]
ing14_Ammonium_chloride -.-> CHEBI_31206
ing15_Ammonium_acetate["Ammonium acetate"]
CultureMech_001397 --> ing15_Ammonium_acetate
CHEBI_62947["CHEBI:62947"]
ing15_Ammonium_acetate -.-> CHEBI_62947
ing16_Pyruvic_acid_sodium_salt["Pyruvic acid sodium salt"]
CultureMech_001397 --> ing16_Pyruvic_acid_sodium_salt
CHEBI_50144["CHEBI:50144"]
ing16_Pyruvic_acid_sodium_salt -.-> CHEBI_50144
ing17_Dextrose["Dextrose"]
CultureMech_001397 --> ing17_Dextrose
CHEBI_17634["CHEBI:17634"]
ing17_Dextrose -.-> CHEBI_17634
ing18_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_001397 --> ing18_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing18_MgSO4_x_7_H2O -.-> CHEBI_31795
ing19_KCl["KCl"]
CultureMech_001397 --> ing19_KCl
CHEBI_32588["CHEBI:32588"]
ing19_KCl -.-> CHEBI_32588
ing20_KH2PO4["KH2PO4"]
CultureMech_001397 --> ing20_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing20_KH2PO4 -.-> CHEBI_63036
ing21_Vitamin_B12["Vitamin B12"]
CultureMech_001397 --> ing21_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing21_Vitamin_B12 -.-> CHEBI_176843
ing22_FeCl2_x_4_H2O["FeCl2 x 4 H2O"]
CultureMech_001397 --> ing22_FeCl2_x_4_H2O
CHEBI_86249["CHEBI:86249"]
ing22_FeCl2_x_4_H2O -.-> CHEBI_86249
Ingredients (23)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
|
44.8148 G_PER_L |
CHEBI:76209
sodium sulfide nonahydrate
|
[Merged 2 duplicates: 30.0, 14.8148] |
| 2 |
HCl
HCl 36.461 g/mol
|
3.85 G_PER_L |
CHEBI:17883
hydrogen chloride
|
[Merged 2 duplicates: 1.925, 1.925] |
| 3 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
1.5 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 4 |
ZnCl2
2Cl.Zn 136.296 g/mol
|
0.14 G_PER_L |
CHEBI:49976
zinc dichloride
|
[Merged 2 duplicates: 0.07, 0.07] |
| 5 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.2 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
[Merged 2 duplicates: 0.1, 0.1] |
| 6 |
H3BO3
H3BO3 61.833 g/mol
|
0.6 G_PER_L |
CHEBI:33118
boric acid
|
[Merged 2 duplicates: 0.3, 0.3] |
| 7 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.38 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
[Merged 2 duplicates: 0.19, 0.19] |
| 8 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.004 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
[Merged 2 duplicates: 0.002, 0.002] |
| 9 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.048 G_PER_L |
CHEBI:34887
nickel dichloride
|
[Merged 2 duplicates: 0.024, 0.024] |
| 10 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.072 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
[Merged 2 duplicates: 0.036, 0.036] |
| 11 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.543478 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 12 | Yeast extract | 0.543478 G_PER_L | ||
| 13 |
NaHCO3
CHO3.Na 84.006 g/mol
|
30 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 14 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.0111111 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 15 |
Ammonium chloride
Cl.H4N 53.492 g/mol
|
13.4615 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 16 |
Ammonium acetate
C2H3O2.H4N 77.083 g/mol
|
9.61539 G_PER_L |
CHEBI:62947
ammonium acetate
|
|
| 17 |
Pyruvic acid sodium salt
C3H3O3.Na 110.044 g/mol
|
9.61539 G_PER_L |
CHEBI:50144
sodium pyruvate
|
|
| 18 |
Dextrose
C6H12O6 180.156 g/mol
|
9.61539 G_PER_L |
CHEBI:17634
D-glucose
|
|
| 19 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
19.2308 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 20 |
KCl
Cl.K 74.551 g/mol
|
13.4615 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 21 |
KH2PO4
H2O4P.K 136.084 g/mol
|
13.4615 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 22 | Vitamin B12 | 0.1 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 23 |
FeCl2 x 4 H2O
Cl2Fe.4H2O 198.811 g/mol
|
1.5 G_PER_L |
CHEBI:86249
iron dichloride tetrahydrate
|
Preparation
- Aliquot Solution A into 100 mL screw-cap bottles, filled with 46 mL each. Bubble with N2/CO2 and autoclave at 121°C for 15 min (as decribed below).
- Prepare the following solutions (resazurin, bicarbonate and Pfennig's heterotrophic salts) and sterilize as given below.
- Add bicarbonate solution and Pfennig's heterotrophic salts to the resazurin (complete volumina, i.e. 50 mL bicarbonate solution and 26 mL Pfennig's heterotrophic salts solution). Bubble with CO2 in an ice bath under sterile conditions.
- Fill 50 ml of this mixture to each bottle of solution A (46 mL + 50 mL).
- Before use, add 4 ml sulfide solution (1.5%) and 0.1 ml Vitamin B12 solution to each 100 mL bottle.
- During the first 24 h, the iron of the medium precipitates in the form of black flocks. No other sediment should arise in the otherwise clear medium. Feed periodically with neutralized 3% solution of sodium sulfide to replenish sulfide and with other supplement solutions (see Ref. 3365).
- Adjust pH to 6.8-7.1 with 1M Na2CO3 (filter-sterilized).
- The sulfide solution is prepared in a 250 ml screw-capped bottle with a butyl rubber septum and a magnetic stirrer. The solution is bubbled with nitrogen gas, closed and autoclaved for 15 min. at 121°C. After cooling to room temperature the pH is adjusted to about 7.0 by adding of sterile 2 M H2SO4 drop-wise with a syringe without opening the bottle.
- Aliquot Solution A into 100 mL screw-cap bottles, filled with 46 mL each. Bubble with N2/CO2 and autoclave at 121°C for 15 min.
- Prepare in a screw-cap bottle, bubble with N2 to replace air, close tightly and autoclave.
- Bubble with CO2 and filter sterilize into sterile, gas-tight, 100 ml screw-cap bottle.
- Autoclave in a cotton-stoppered Erlenmeyer flask with an outlet tube for medium, connected to a glass outlet at the bottom of the vessel and has, at the other end, a silicon rubber tube with a pinch cock and a bell for aseptic dispensing of the medium into bottles.
- Cool to room temperature under an atmosphere of N2/CO2 in an ice bath.
- Filter sterilize into sterile, gas-tight, 100 ml screw-cap bottle.
- Filter sterilized
- First dissolve FeCl2 in the HCl, then dilute in water, add and dissolve the other salts. Finally make up to 1000.00 ml.
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- pfennigs_medium_ii (CultureMech:001397)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:10.004644Z | mediadive-import | Imported from MediaDive | Source: DSMZ, ID: 29 |
| 2026-03-13T03:09:09.714437Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 9 duplicate ingredient(s) |
| 2026-03-13T06:19:03.761994Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:001397 |
| 2026-03-17T06:30:16.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:15.729847+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "PFENNIG'S MEDIUM II" to "pfennigs_medium_ii" for consistent matching |
| 2026-05-20T06:02:02.348791+00:00 | migrate_ph_range.py | MIGRATED_PH_RANGE | ph_range '6.8-7.1' -> {'min': 6.8, 'max': 7.1} |
| 2026-06-05T07:41:41.610385+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 21 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:47:10.133489+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:52.792706+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint 98923e034263ce182ee8627aa1897269749600f09f9634224e9bdf1600999801 |