mineral_medium_ph_7_25

CultureMech:001585 bacterial COMPLEX SOLID_AGAR
Original name: MINERAL MEDIUM PH 7.25

Overview

External ontology
mediadive.medium:465 (source link unavailable) — MINERAL MEDIUM PH 7.25
Applications
  • Microbial cultivation
pH
7.2
Notes
Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium465.pdf Commercial Product: Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Supplier: Multiple suppliers (BD, Sigma, Neogen) Catalog: Multiple (22092 Sigma, 211825 BD) Source: https://en.wikipedia.org/wiki/Tryptic_soy_broth Accessed: 2026-03-28 Constituent composition researched from product specification.

Composition

flowchart LR
    CultureMech_001585["mineral_medium_ph_7_25"]
    ing0_Na2HPO4_x_2_H2O["Na2HPO4 x 2 H2O"]
    CultureMech_001585 --> ing0_Na2HPO4_x_2_H2O
    CHEBI_91258["CHEBI:91258"]
    ing0_Na2HPO4_x_2_H2O -.-> CHEBI_91258
    ing1_KH2PO4["KH2PO4"]
    CultureMech_001585 --> ing1_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing1_KH2PO4 -.-> CHEBI_63036
    ing2__NH4_2SO4["(NH4)2SO4"]
    CultureMech_001585 --> ing2__NH4_2SO4
    CHEBI_62946["CHEBI:62946"]
    ing2__NH4_2SO4 -.-> CHEBI_62946
    ing3_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
    CultureMech_001585 --> ing3_MgCl2_x_6_H2O
    CHEBI_86345["CHEBI:86345"]
    ing3_MgCl2_x_6_H2O -.-> CHEBI_86345
    ing4_Ca_NO3_2_x_4_H2O["Ca(NO3)2 x 4 H2O"]
    CultureMech_001585 --> ing4_Ca_NO3_2_x_4_H2O
    CHEBI_86159["CHEBI:86159"]
    ing4_Ca_NO3_2_x_4_H2O -.-> CHEBI_86159
    ing5_Peptone["Peptone"]
    CultureMech_001585 --> ing5_Peptone
    ing6_Meat_extract["Meat extract"]
    CultureMech_001585 --> ing6_Meat_extract
    ing7_Agar["Agar"]
    CultureMech_001585 --> ing7_Agar
    CHEBI_2509["CHEBI:2509"]
    ing7_Agar -.-> CHEBI_2509
    ing8_Casein_peptone["Casein peptone"]
    CultureMech_001585 --> ing8_Casein_peptone
    ing9_Soy_peptone["Soy peptone"]
    CultureMech_001585 --> ing9_Soy_peptone
    ing10_NaCl["NaCl"]
    CultureMech_001585 --> ing10_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing10_NaCl -.-> CHEBI_26710
    ing11_Pancreatic_digest_of_casein["Pancreatic digest of casein"]
    CultureMech_001585 --> ing11_Pancreatic_digest_of_casein
    ing12_Peptic_digest_of_soybean_meal["Peptic digest of soybean meal"]
    CultureMech_001585 --> ing12_Peptic_digest_of_soybean_meal
    ing13_Glucose["Glucose"]
    CultureMech_001585 --> ing13_Glucose
    CHEBI_17234["CHEBI:17234"]
    ing13_Glucose -.-> CHEBI_17234
    ing14_Sodium_chloride["Sodium chloride"]
    CultureMech_001585 --> ing14_Sodium_chloride
    ing14_Sodium_chloride -.-> CHEBI_26710
    ing15_Dipotassium_phosphate["Dipotassium phosphate"]
    CultureMech_001585 --> ing15_Dipotassium_phosphate
    CHEBI_131527["CHEBI:131527"]
    ing15_Dipotassium_phosphate -.-> CHEBI_131527
    ing16_Agar["Agar"]
    CultureMech_001585 --> ing16_Agar
    ing16_Agar -.-> CHEBI_2509
    ing17_Yeast_extract["Yeast extract"]
    CultureMech_001585 --> ing17_Yeast_extract
    ing18_Proteose_peptone["Proteose peptone"]
    CultureMech_001585 --> ing18_Proteose_peptone
    ing19_Casamino_acids["Casamino acids"]
    CultureMech_001585 --> ing19_Casamino_acids
    ing20_Glucose["Glucose"]
    CultureMech_001585 --> ing20_Glucose
    ing20_Glucose -.-> CHEBI_17234
    ing21_Starch["Starch"]
    CultureMech_001585 --> ing21_Starch
    CHEBI_28017["CHEBI:28017"]
    ing21_Starch -.-> CHEBI_28017
    ing22_Na_pyruvate["Na-pyruvate"]
    CultureMech_001585 --> ing22_Na_pyruvate
    CHEBI_50144["CHEBI:50144"]
    ing22_Na_pyruvate -.-> CHEBI_50144
    ing23_K2HPO4["K2HPO4"]
    CultureMech_001585 --> ing23_K2HPO4
    ing23_K2HPO4 -.-> CHEBI_131527
    ing24_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_001585 --> ing24_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing24_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing25_Na2_EDTA["Na2-EDTA"]
    CultureMech_001585 --> ing25_Na2_EDTA
    CHEBI_64734["CHEBI:64734"]
    ing25_Na2_EDTA -.-> CHEBI_64734
    ing26_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_001585 --> ing26_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing26_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing27_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
    CultureMech_001585 --> ing27_ZnSO4_x_7_H2O
    CHEBI_32312["CHEBI:32312"]
    ing27_ZnSO4_x_7_H2O -.-> CHEBI_32312
    ing28_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_001585 --> ing28_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing28_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing29_H3BO3["H3BO3"]
    CultureMech_001585 --> ing29_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing29_H3BO3 -.-> CHEBI_33118
    CultureMech_001585 --> more["...4 more"]

Ingredients (34)

# Ingredient Concentration Ontology Notes
1 Na2HPO4 x 2 H2O
2H2O.HO4P.2Na 177.988 g/mol
3.5 G_PER_L CHEBI:91258
disodium hydrogenphosphate dihydrate
2 KH2PO4
H2O4P.K 136.084 g/mol
1 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
3 (NH4)2SO4
2H4N.O4S 132.141 g/mol
0.5 G_PER_L CHEBI:62946
ammonium sulfate
4 MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
0.1 G_PER_L CHEBI:86345
magnesium dichloride hexahydrate
5 Ca(NO3)2 x 4 H2O
Ca.4H2O.2NO3 236.146 g/mol
0.05 G_PER_L CHEBI:86159
calcium nitrate tetrahydrate
6 Peptone 5 G_PER_L
7 Meat extract 3 G_PER_L
8 Agar 65.0 G_PER_L CHEBI:2509
agar
(for solid medium) [Merged 4 duplicates: 15.0, 15.0, 20.0, 15.0]
9 Casein peptone 15 G_PER_L
10 Soy peptone 5 G_PER_L
11 NaCl
Cl.Na 58.443 g/mol
5 G_PER_L CHEBI:26710
sodium chloride
12 Pancreatic digest of casein
Multiple suppliers (BD, Sigma, Neogen) Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Multiple (22092 Sigma, 211825 BD)
17.0 G_PER_L MICRO:0000182 (source link unavailable)
tryptone
Pancreatic enzymatic digest of casein providing amino acids and peptides; Constituent of Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) commercial product
13 Peptic digest of soybean meal
Multiple suppliers (BD, Sigma, Neogen) Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Multiple (22092 Sigma, 211825 BD)
3.0 G_PER_L FOODON:03315720
vegetable protein, hydrolyzed
Peptic digest of soybean meal providing additional peptides and carbohydrates; Constituent of Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) commercial product
14 Glucose
C6H12O6 180.156 g/mol
Multiple suppliers (BD, Sigma, Neogen) Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Multiple (22092 Sigma, 211825 BD)
2.5 G_PER_L CHEBI:17234
glucose
Carbon/energy source; Constituent of Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) commercial product
15 Sodium chloride
Cl.Na 58.443 g/mol
Multiple suppliers (BD, Sigma, Neogen) Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Multiple (22092 Sigma, 211825 BD)
5.0 G_PER_L CHEBI:26710
sodium chloride
Maintains osmotic equilibrium; Constituent of Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) commercial product
16 Dipotassium phosphate
HO4P.2K 174.174 g/mol
Multiple suppliers (BD, Sigma, Neogen) Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Multiple (22092 Sigma, 211825 BD)
2.5 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
pH buffer; Constituent of Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) commercial product
17 Agar
Multiple suppliers (BD, Sigma, Neogen) Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Multiple (22092 Sigma, 211825 BD)
15.0 G_PER_L CHEBI:2509
agar
Solidifying agent (for TSA only, not in TSB); Constituent of Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) commercial product
18 Yeast extract 0.5 G_PER_L
19 Proteose peptone 0.5 G_PER_L
20 Casamino acids 0.5 G_PER_L
21 Glucose
C6H12O6 180.156 g/mol
0.5 G_PER_L CHEBI:17234
glucose
22 Starch 0.5 G_PER_L CHEBI:28017
starch
23 Na-pyruvate
C3H3O3.Na 110.044 g/mol
0.3 G_PER_L CHEBI:50144
sodium pyruvate
24 K2HPO4
HO4P.2K 174.174 g/mol
0.3 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
25 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
0.05 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
26 Na2-EDTA
C10H14N2O8.2Na 336.208 g/mol
0.5 G_PER_L CHEBI:64734
EDTA disodium salt (anhydrous)
27 FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
0.2 G_PER_L CHEBI:75836
iron(2+) sulfate heptahydrate
28 ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
0.1 G_PER_L CHEBI:32312
zinc sulfate heptahydrate
29 MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
0.03 G_PER_L CHEBI:86368
manganese(II) chloride tetrahydrate
30 H3BO3
H3BO3 61.833 g/mol
0.3 G_PER_L CHEBI:33118
boric acid
31 CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
0.2 G_PER_L CHEBI:53503
cobalt chloride hexahydrate
32 CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
0.01 G_PER_L CHEBI:86318
copper(II) chloride dihydrate
33 NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
0.02 G_PER_L CHEBI:34887
nickel dichloride
34 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
0.03 G_PER_L CHEBI:75213
sodium molybdate dihydrate

Preparation

  1. pH 7.25
  2. Rehydrate and cultivate lyophilized cells in the complex medium recommended for the specific strain (e.g. medium 1, 220, 535 or 830). After this reactivation, cultivate on mineral medium with the appropriate carbon source.
  3. Adjust pH to 7.0.
  4. For Bacillus strains the addition of 10.0 mg MnSO4 x H2O is recommended for sporulation.
  5. Adjust pH to 7.3. Medium is identical with Tryptone Soya Agar (Oxoid CM 131).
  6. pH 7.3
  7. Autoclave at 121°C for 15 min.
  8. Final pH 7.2; adjust with crystalline K2HPO4 or KH2PO4 before adding agar. Add agar, heat medium to boiling to dissolve agar, and autoclave for 15 min at 121°C.
  9. First dissolve EDTA in distilled water and adjust pH to 7.0 using 2 N NaOH; then add other compounds.

Target organisms

No target organisms are recorded.

Provenance

Merged from 1 source record.

TimestampCuratorActionNotes
2026-01-26T17:53:11.227637Z mediadive-import Imported from MediaDive Source: DSMZ, ID: 465
2026-01-28T19:48:27.695543Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-03-13T03:09:16.321068Z data-quality-cleanup-v1.0 Data quality fixes Merged 3 duplicate ingredient(s)
2026-03-13T06:19:05.389547Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:001585
2026-03-17T06:30:24.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:17.511173+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "MINERAL MEDIUM PH 7.25" to "mineral_medium_ph_7_25" for consistent matching
2026-06-05T07:41:34.219619+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 22 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-08T23:19:48.302304+00:00 chebi-regrounding-v1.0 Corrected CHEBI ingredient grounding (shared-id regrounding audit, G21/G22/G24) Part of the shared-id CHEBI regrounding audit (G21/G22/G24): one or more ingredient groundings on this record that had been collapsed onto a chemically non-specific or shared CHEBI id were re-grounded to the correct chemically-specific term, verified against OAK chebi.db rdfs:label. See reports/chebi_grounding_audit.md.
2026-06-10T07:47:07.906212+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 5 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:05:45.852971+00:00 merge_recipes.py MERGED_RECIPES merged 1 source recipe(s) on fingerprint 3b096a18a5ea460ba3fffdac8214b0067b6ce89f6c8a4ed752c6341a3983b278