Overview
- External ontology
- mediadive.medium:78d (source link unavailable) — MEDIUM FOR TREPONEMA PARVUM
- Applications
-
- Microbial cultivation
- pH
- 7.0
- Notes
- Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium78d.pdf
Composition
flowchart LR
CultureMech_001930["medium_for_treponema_parvum"]
ing0_Calf_serum["Calf serum"]
CultureMech_001930 --> ing0_Calf_serum
ing1_KCl["KCl"]
CultureMech_001930 --> ing1_KCl
CHEBI_32588["CHEBI:32588"]
ing1_KCl -.-> CHEBI_32588
ing2_Vitamin_B12["Vitamin B12"]
CultureMech_001930 --> ing2_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing2_Vitamin_B12 -.-> CHEBI_176843
ing3_Pantothenic_acid["Pantothenic acid"]
CultureMech_001930 --> ing3_Pantothenic_acid
CHEBI_7916["CHEBI:7916"]
ing3_Pantothenic_acid -.-> CHEBI_7916
ing4_Riboflavin["Riboflavin"]
CultureMech_001930 --> ing4_Riboflavin
CHEBI_17015["CHEBI:17015"]
ing4_Riboflavin -.-> CHEBI_17015
ing5_Pyridoxamine_hydrochloride["Pyridoxamine hydrochloride"]
CultureMech_001930 --> ing5_Pyridoxamine_hydrochloride
CHEBI_131531["CHEBI:131531"]
ing5_Pyridoxamine_hydrochloride -.-> CHEBI_131531
ing6_Biotin["Biotin"]
CultureMech_001930 --> ing6_Biotin
CHEBI_15956["CHEBI:15956"]
ing6_Biotin -.-> CHEBI_15956
ing7_Folic_acid["Folic acid"]
CultureMech_001930 --> ing7_Folic_acid
CHEBI_27470["CHEBI:27470"]
ing7_Folic_acid -.-> CHEBI_27470
ing8_Nicotinic_acid["Nicotinic acid"]
CultureMech_001930 --> ing8_Nicotinic_acid
CHEBI_15940["CHEBI:15940"]
ing8_Nicotinic_acid -.-> CHEBI_15940
ing9_Nicotine_amide["Nicotine amide"]
CultureMech_001930 --> ing9_Nicotine_amide
CHEBI_17154["CHEBI:17154"]
ing9_Nicotine_amide -.-> CHEBI_17154
ing10_alpha_lipoic_acid["alpha-lipoic acid"]
CultureMech_001930 --> ing10_alpha_lipoic_acid
CHEBI_16494["CHEBI:16494"]
ing10_alpha_lipoic_acid -.-> CHEBI_16494
ing11_p_Aminobenzoic_acid["p-Aminobenzoic acid"]
CultureMech_001930 --> ing11_p_Aminobenzoic_acid
CHEBI_30753["CHEBI:30753"]
ing11_p_Aminobenzoic_acid -.-> CHEBI_30753
ing12_Thiamine_HCl_x_2_H2O["Thiamine-HCl x 2 H2O"]
CultureMech_001930 --> ing12_Thiamine_HCl_x_2_H2O
CHEBI_132751["CHEBI:132751"]
ing12_Thiamine_HCl_x_2_H2O -.-> CHEBI_132751
ing13_L_Histidin["L-Histidin"]
CultureMech_001930 --> ing13_L_Histidin
CHEBI_15971["CHEBI:15971"]
ing13_L_Histidin -.-> CHEBI_15971
ing14_L_Serin["L-Serin"]
CultureMech_001930 --> ing14_L_Serin
CHEBI_17115["CHEBI:17115"]
ing14_L_Serin -.-> CHEBI_17115
ing15_L_Glutamine["L-Glutamine"]
CultureMech_001930 --> ing15_L_Glutamine
CHEBI_18050["CHEBI:18050"]
ing15_L_Glutamine -.-> CHEBI_18050
ing16_Hemin["Hemin"]
CultureMech_001930 --> ing16_Hemin
CHEBI_50385["CHEBI:50385"]
ing16_Hemin -.-> CHEBI_50385
ing17_NaOH["NaOH"]
CultureMech_001930 --> ing17_NaOH
CHEBI_32145["CHEBI:32145"]
ing17_NaOH -.-> CHEBI_32145
ing18_Tryptone_peptone["Tryptone peptone"]
CultureMech_001930 --> ing18_Tryptone_peptone
ing19_Casamino_acids["Casamino acids"]
CultureMech_001930 --> ing19_Casamino_acids
ing20_Yeast_extract["Yeast extract"]
CultureMech_001930 --> ing20_Yeast_extract
ing21_Ascorbic_acid["Ascorbic acid"]
CultureMech_001930 --> ing21_Ascorbic_acid
CHEBI_22652["CHEBI:22652"]
ing21_Ascorbic_acid -.-> CHEBI_22652
ing22_N_Acetylglucosamine["N-Acetylglucosamine"]
CultureMech_001930 --> ing22_N_Acetylglucosamine
CHEBI_59640["CHEBI:59640"]
ing22_N_Acetylglucosamine -.-> CHEBI_59640
ing23_Na_pyruvate["Na-pyruvate"]
CultureMech_001930 --> ing23_Na_pyruvate
CHEBI_50144["CHEBI:50144"]
ing23_Na_pyruvate -.-> CHEBI_50144
ing24_Glutathione["Glutathione"]
CultureMech_001930 --> ing24_Glutathione
CHEBI_16856["CHEBI:16856"]
ing24_Glutathione -.-> CHEBI_16856
ing25_Ground_beef["Ground beef"]
CultureMech_001930 --> ing25_Ground_beef
ing26_Casitone["Casitone"]
CultureMech_001930 --> ing26_Casitone
ing27_K2HPO4["K2HPO4"]
CultureMech_001930 --> ing27_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing27_K2HPO4 -.-> CHEBI_131527
ing28_Resazurin["Resazurin"]
CultureMech_001930 --> ing28_Resazurin
CHEBI_8806["CHEBI:8806"]
ing28_Resazurin -.-> CHEBI_8806
ing29_L_Cysteine_HCl["L-Cysteine HCl"]
CultureMech_001930 --> ing29_L_Cysteine_HCl
CHEBI_91247["CHEBI:91247"]
ing29_L_Cysteine_HCl -.-> CHEBI_91247
CultureMech_001930 --> more["...5 more"]
Ingredients (35)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Calf serum | 10 G_PER_L | ||
| 2 |
KCl
Cl.K 74.551 g/mol
|
5 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 3 | Vitamin B12 | 0.05 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 4 |
Pantothenic acid
C9H17NO5 219.237 g/mol
|
0.05 G_PER_L |
CHEBI:7916
pantothenic acid
|
|
| 5 |
Riboflavin
C17H20N4O6 376.369 g/mol
|
0.05 G_PER_L |
CHEBI:17015
riboflavin
|
|
| 6 |
Pyridoxamine hydrochloride
C8H12N2O2.HCl 204.657 g/mol
|
0.01 G_PER_L |
CHEBI:131531
pyridoxamine hydrochloride
|
|
| 7 |
Biotin
C10H16N2O3S 244.316 g/mol
|
0.02 G_PER_L |
CHEBI:15956
biotin
|
|
| 8 |
Folic acid
C19H19N7O6 441.404 g/mol
|
0.02 G_PER_L |
CHEBI:27470
folic acid
|
|
| 9 |
Nicotinic acid
C6H5NO2 123.111 g/mol
|
0.025 G_PER_L |
CHEBI:15940
nicotinic acid
|
|
| 10 |
Nicotine amide
C6H6N2O 122.127 g/mol
|
0.025 G_PER_L |
CHEBI:17154
nicotinamide
|
|
| 11 |
alpha-lipoic acid
C8H14O2S2 206.332 g/mol
|
0.05 G_PER_L |
CHEBI:16494
lipoic acid
|
|
| 12 |
p-Aminobenzoic acid
C7H7NO2 137.138 g/mol
|
0.05 G_PER_L |
CHEBI:30753
4-aminobenzoic acid
|
|
| 13 |
Thiamine-HCl x 2 H2O
C12H18N4OS.2Cl.2H2O 373.306 g/mol
|
0.05 G_PER_L |
CHEBI:132751
thiamine hydrochloride dihydrate
|
|
| 14 |
L-Histidin
C6H9N3O2 155.157 g/mol
|
12 G_PER_L |
CHEBI:15971
L-histidine
|
|
| 15 |
L-Serin
C3H7NO3 105.093 g/mol
|
10 G_PER_L |
CHEBI:17115
L-serine
|
|
| 16 |
L-Glutamine
C5H10N2O3 146.146 g/mol
|
14 G_PER_L |
CHEBI:18050
L-glutamine
|
|
| 17 |
Hemin
C34H32ClFeN4O4 651.952 g/mol
|
0.1 G_PER_L |
CHEBI:50385
hemin
|
|
| 18 |
NaOH
HO.Na 39.997 g/mol
|
27.0 G_PER_L |
CHEBI:32145
sodium hydroxide
|
[Merged 3 duplicates: 1.0, 25.0, 1.0] |
| 19 | Tryptone peptone | 32 G_PER_L | ||
| 20 | Casamino acids | 32 G_PER_L | ||
| 21 | Yeast extract | 36.87805 G_PER_L | [Merged 2 duplicates: 32.0, 4.87805] | |
| 22 | Ascorbic acid | 20 G_PER_L |
CHEBI:22652
ascorbic acid
|
|
| 23 | N-Acetylglucosamine | 100 G_PER_L |
CHEBI:59640
N-acetylglucosamine
|
|
| 24 |
Na-pyruvate
C3H3O3.Na 110.044 g/mol
|
100 G_PER_L |
CHEBI:50144
sodium pyruvate
|
|
| 25 |
Glutathione
C10H17N3O6S 307.328 g/mol
|
140 G_PER_L |
CHEBI:16856
glutathione
|
|
| 26 | Ground beef | 487.805 G_PER_L | ||
| 27 | Casitone | 29.2683 G_PER_L | ||
| 28 |
K2HPO4
HO4P.2K 174.174 g/mol
|
4.87805 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 29 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.00097561 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 30 |
L-Cysteine HCl
C3H7NO2S.HCl 157.622 g/mol
|
0.487805 G_PER_L |
CHEBI:91247
L-cysteine hydrochloride
|
|
| 31 | Agar | 14.6341 G_PER_L |
CHEBI:2509
agar
|
(for solid medium) |
| 32 |
Haemin
C34H32ClFeN4O4 651.952 g/mol
|
0.5 G_PER_L |
CHEBI:50385
hemin
|
|
| 33 |
Vitamin K3
C11H8O2 172.183 g/mol
|
0.05 G_PER_L |
CHEBI:28869
menadione
|
|
| 34 |
Ethanol
C2H6O 46.069 g/mol
|
959.5 G_PER_L |
CHEBI:16236
ethanol
|
[Merged 2 duplicates: 9.5, 950.0] |
| 35 |
Vitamin K1
C31H46O2 450.707 g/mol
|
0.1 G_PER_L |
CHEBI:18067
phylloquinone
|
Preparation
- To medium 78 add per liter:
- Prepare medium anaerobically under N2:CO2 (80:20). After inoculation of the tubes, pressurize them with hydrogen gas to 150 kP (1.5 bar).
- All following solutions were filter sterilized
- Stir for some hours, filter sterilize the solution.
- Amino acid solution per 50 ml:
- Dissolve 5 mg hemin in 1 ml 1 M NaOH, fill up to 50 ml with dist. water.
- Peptone mixture per 50 ml:
- Dissolve 1 g ascorbic acid in 40 ml dist. water, adjust pH to 7.0. fill up to 50 ml.
- N-Acetylglucosamin and pyruvate solution per 50 ml :
- Dissolve 7 g glutathione in 40 ml dist. Water, adjust pH to 7.0 and fill up to 50 ml.
- Depending on organism use different modification .
- To make medium anoxic bring it to a boil, cool under 100% N2 gas atmosphere, add 0.5 g/l L-cysteine hydrochloride and adjust pH to 7.0. Dispense under 100% N2 gas atmosphere by filling 7 ml medium into anoxic Hungate-type tubes (for strains demanding meat particles put those first into the tube (use 1 part meat particles to 4 or 5 parts fluid)). Autoclave at 121°C for 30 min. For agar slants use 15.0 g agar per 1000.0 ml medium.
- In some cases (as indicated in the catalogue) the addition of Haemin and Vitamin K1 or Vitamin K3 is necessary. Add to 1000 ml of medium after autoclaving:
- Use lean beef or horse meat. Remove fat and connective tissue before grinding. Mix meat, water and NaOH, then boil for 15 min with stirring. Cool to room temperature, skim fat off surface, and filter, retaining both meat particles and filtrate. To the filtrate add water to a final volume of 1000 ml, and then add:
- Dissolve 50 mg haemin in 1 ml 1 N NaOH; make up to 100 ml with distilled water and filter sterilize. Store refrigerated.
- Dissolve 5 mg vitamin K3 in 1 ml 95% ethanol, dilute to 0.05 mg/ml in water and filter sterilize. Store refrigerated in a brown bottle.
- Dissolve 0.1 ml of vitamin K1 in 20 ml 95% ethanol and filter sterilize. Store refrigerated in a brown bottle.
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- medium_for_treponema_parvum (CultureMech:001930)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:10.110398Z | mediadive-import | Imported from MediaDive | Source: DSMZ, ID: 78d |
| 2026-01-28T19:48:24.239484Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-13T03:09:09.963139Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 4 duplicate ingredient(s) |
| 2026-03-13T06:19:08.526724Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:001930 |
| 2026-03-17T06:30:16.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:20.977828+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "MEDIUM FOR TREPONEMA PARVUM" to "medium_for_treponema_parvum" for consistent matching |
| 2026-06-05T07:41:30.145944+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 27 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-08T23:19:47.536544+00:00 | chebi-regrounding-v1.0 | Corrected CHEBI ingredient grounding (audit G21/G22) | Re-grounded 2 term reference(s) to the correct CHEBI (see reports/chebi_grounding_audit.md). Label-conditional fixes for pyridoxine/pyridoxamine, glycerol, MnSO4, Ca(NO3)2, selenate; casamino acids de-grounded (mixture, no single CHEBI). |
| 2026-06-10T07:47:06.455248+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:44.185318+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint 94f581730f39c2ab5d8427fc40b14d7a4e1e0aed45ce6541c2a4313ddf08841b |