Overview
- External ontology
- mediadive.medium:J811 (source link unavailable) — THERMOCOCCALES RICH MEDIUM
- Applications
-
- Microbial cultivation
- pH
- 6.8
- Notes
- Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=811
Composition
flowchart LR
CultureMech_003156["thermococcales_rich_medium"]
ing0_PIPES["PIPES"]
CultureMech_003156 --> ing0_PIPES
CHEBI_39033["CHEBI:39033"]
ing0_PIPES -.-> CHEBI_39033
ing1_NaCl["NaCl"]
CultureMech_003156 --> ing1_NaCl
CHEBI_26710["CHEBI:26710"]
ing1_NaCl -.-> CHEBI_26710
ing2_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
CultureMech_003156 --> ing2_MgCl2_x_6_H2O
CHEBI_86345["CHEBI:86345"]
ing2_MgCl2_x_6_H2O -.-> CHEBI_86345
ing3_KCl["KCl"]
CultureMech_003156 --> ing3_KCl
CHEBI_32588["CHEBI:32588"]
ing3_KCl -.-> CHEBI_32588
ing4__NH4_2SO4["(NH4)2SO4"]
CultureMech_003156 --> ing4__NH4_2SO4
CHEBI_62946["CHEBI:62946"]
ing4__NH4_2SO4 -.-> CHEBI_62946
ing5_K2HPO4["K2HPO4"]
CultureMech_003156 --> ing5_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing5_K2HPO4 -.-> CHEBI_131527
ing6_KH2PO4["KH2PO4"]
CultureMech_003156 --> ing6_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing6_KH2PO4 -.-> CHEBI_63036
ing7_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_003156 --> ing7_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing7_CaCl2_x_2_H2O -.-> CHEBI_86158
ing8_NaBr["NaBr"]
CultureMech_003156 --> ing8_NaBr
CHEBI_63004["CHEBI:63004"]
ing8_NaBr -.-> CHEBI_63004
ing9_SrCl2_x_6_H2O["SrCl2 x 6 H2O"]
CultureMech_003156 --> ing9_SrCl2_x_6_H2O
CHEBI_36385["CHEBI:36385"]
ing9_SrCl2_x_6_H2O -.-> CHEBI_36385
ing10_Na2WO4_x_2_H2O["Na2WO4 x 2 H2O"]
CultureMech_003156 --> ing10_Na2WO4_x_2_H2O
CHEBI_63939["CHEBI:63939"]
ing10_Na2WO4_x_2_H2O -.-> CHEBI_63939
ing11_FeCl3_x_6_H2O["FeCl3 x 6 H2O"]
CultureMech_003156 --> ing11_FeCl3_x_6_H2O
CHEBI_86254["CHEBI:86254"]
ing11_FeCl3_x_6_H2O -.-> CHEBI_86254
ing12_Yeast_extract["Yeast extract"]
CultureMech_003156 --> ing12_Yeast_extract
ing13_Tryptone["Tryptone"]
CultureMech_003156 --> ing13_Tryptone
ing14_Sulfur["Sulfur"]
CultureMech_003156 --> ing14_Sulfur
CHEBI_26833["CHEBI:26833"]
ing14_Sulfur -.-> CHEBI_26833
ing15_Na2S_x_9_H2O["Na2S x 9 H2O"]
CultureMech_003156 --> ing15_Na2S_x_9_H2O
CHEBI_76209["CHEBI:76209"]
ing15_Na2S_x_9_H2O -.-> CHEBI_76209
ing16_Resazurin["Resazurin"]
CultureMech_003156 --> ing16_Resazurin
CHEBI_8806["CHEBI:8806"]
ing16_Resazurin -.-> CHEBI_8806
Ingredients (17)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | PIPES | 3.3 G_PER_L |
CHEBI:39033
PIPES
|
|
| 2 |
NaCl
Cl.Na 58.443 g/mol
|
23 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 3 |
MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
|
5 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
|
| 4 |
KCl
Cl.K 74.551 g/mol
|
0.7 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 5 |
(NH4)2SO4
2H4N.O4S 132.141 g/mol
|
0.5 G_PER_L |
CHEBI:62946
ammonium sulfate
|
|
| 6 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.05 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 7 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.05 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 8 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.02 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 9 |
NaBr
Br.Na 102.894 g/mol
|
0.05 G_PER_L |
CHEBI:63004
sodium bromide
|
|
| 10 |
SrCl2 x 6 H2O
Cl2Sr.6H2O 266.616 g/mol
|
0.01 G_PER_L |
CHEBI:36385
strontium dichloride hexahydrate
|
|
| 11 |
Na2WO4 x 2 H2O
2H2O.2Na.O4W 329.846 g/mol
|
0.0033 G_PER_L |
CHEBI:63939
sodium tungstate dihydrate
|
|
| 12 |
FeCl3 x 6 H2O
Cl3Fe.6H2O 270.294 g/mol
|
0.0068 G_PER_L |
CHEBI:86254
iron trichloride hexahydrate
|
|
| 13 | Yeast extract | 1 G_PER_L | ||
| 14 | Tryptone | 4 G_PER_L | ||
| 15 |
Sulfur
S 32.067 g/mol
|
10 G_PER_L |
CHEBI:26833
sulfur atom
|
|
| 16 |
Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
|
0.5 G_PER_L |
CHEBI:76209
sodium sulfide nonahydrate
|
|
| 17 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.001 G_PER_L |
CHEBI:8806
Resazurin
|
Preparation
- Mix ingredients except Na2S x 9H2O, adjust pH to 6.8 and distribute the medium into culture vessels (e.g., 70 ml in 120 ml serum bottles). Bubble the medium with N2 gas for 30 min and seal with butyl rubber stoppers. Steam the medium for 3 hr on each of 3 successive days. Reduce the medium with sterile Na2S x 9H2O solution (neutralized and autoclaved under a N2 atmosphere) and readjust pH to 6.8, if necessary.
- Comment: For cultivation of JCM 16557, inoculated cultures should be pressurized to 20 to 100 MPa. Therefore, aspirate the culture into a plastic syringe with a 18G needle and stick the needle into a silicone rubber stopper. Put the assemblage of the syringe, needle and rubber stopper in a pressure vessel, pour water into the vessel and keep pressure inside between 20 and 100 MPa (at 90C).
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- thermococcales_rich_medium (CultureMech:003156)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:17.665515Z | mediadive-import | Imported from MediaDive | Source: JCM, ID: J811 |
| 2026-03-13T06:19:18.190199Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003156 |
| 2026-03-17T06:30:48.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:32.013378+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "THERMOCOCCALES RICH MEDIUM" to "thermococcales_rich_medium" for consistent matching |
| 2026-06-05T07:41:49.846938+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 15 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:47:12.888123+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:04:32.927651+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint f010577774cf22ccf63e5ca7036b73404a6346066b2e95cd5b9366c7c71f9cbd |