Overview
- External ontology
- komodo.medium:109 (source link unavailable) — RHODOPSEUDOMONAS SULFOVIRIDIS medium
- Applications
-
- Microbial cultivation
- pH
- 6.8
- Notes
- Source: KOMODO ModelSEED | ID: 109 | DSMZ Medium: 109 (mediadive.medium:109) | Aerobic: Yes
Composition
flowchart LR
CultureMech_003752["rhodopseudomonas_sulfoviridis_medium"]
ing0_Yeast_extract["Yeast extract"]
CultureMech_003752 --> ing0_Yeast_extract
ing1_Disodium_succinate["Disodium succinate"]
CultureMech_003752 --> ing1_Disodium_succinate
CHEBI_63675["CHEBI:63675"]
ing1_Disodium_succinate -.-> CHEBI_63675
ing2_Ammonium_acetate["Ammonium acetate"]
CultureMech_003752 --> ing2_Ammonium_acetate
CHEBI_62947["CHEBI:62947"]
ing2_Ammonium_acetate -.-> CHEBI_62947
ing3_Fe_III__citrate["Fe(III) citrate"]
CultureMech_003752 --> ing3_Fe_III__citrate
CHEBI_144421["CHEBI:144421"]
ing3_Fe_III__citrate -.-> CHEBI_144421
ing4_KH2PO4["KH2PO4"]
CultureMech_003752 --> ing4_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing4_KH2PO4 -.-> CHEBI_63036
ing5_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_003752 --> ing5_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing5_MgSO4_x_7_H2O -.-> CHEBI_31795
ing6_NaCl["NaCl"]
CultureMech_003752 --> ing6_NaCl
CHEBI_26710["CHEBI:26710"]
ing6_NaCl -.-> CHEBI_26710
ing7_NH4Cl["NH4Cl"]
CultureMech_003752 --> ing7_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing7_NH4Cl -.-> CHEBI_31206
ing8_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_003752 --> ing8_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing8_CaCl2_x_2_H2O -.-> CHEBI_86158
ing9_Vitamin_B12["Vitamin B12"]
CultureMech_003752 --> ing9_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing9_Vitamin_B12 -.-> CHEBI_176843
ing10_L_Cysteine_HCl["L-Cysteine HCl"]
CultureMech_003752 --> ing10_L_Cysteine_HCl
CHEBI_91247["CHEBI:91247"]
ing10_L_Cysteine_HCl -.-> CHEBI_91247
ing11_Resazurin["Resazurin"]
CultureMech_003752 --> ing11_Resazurin
CHEBI_8806["CHEBI:8806"]
ing11_Resazurin -.-> CHEBI_8806
ing12_Sodium_malate["Sodium malate"]
CultureMech_003752 --> ing12_Sodium_malate
CHEBI_91260["CHEBI:91260"]
ing12_Sodium_malate -.-> CHEBI_91260
ing13_Sodium_Thiosulfate["Sodium Thiosulfate"]
CultureMech_003752 --> ing13_Sodium_Thiosulfate
CHEBI_132112["CHEBI:132112"]
ing13_Sodium_Thiosulfate -.-> CHEBI_132112
ing14_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_003752 --> ing14_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing14_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing15_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_003752 --> ing15_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing15_MnCl2_x_4_H2O -.-> CHEBI_86368
ing16_H3BO3["H3BO3"]
CultureMech_003752 --> ing16_H3BO3
CHEBI_33118["CHEBI:33118"]
ing16_H3BO3 -.-> CHEBI_33118
ing17_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_003752 --> ing17_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing17_CoCl2_x_6_H2O -.-> CHEBI_53503
ing18_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_003752 --> ing18_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing18_CuCl2_x_2_H2O -.-> CHEBI_86318
ing19_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_003752 --> ing19_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing19_NiCl2_x_6_H2O -.-> CHEBI_34887
ing20_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_003752 --> ing20_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing20_Na2MoO4_x_2_H2O -.-> CHEBI_75213
Ingredients (21)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Yeast extract | 0.3 G_PER_L | ||
| 2 |
Disodium succinate
C4H4O4.2Na 162.052 g/mol
|
1 G_PER_L |
CHEBI:63675
sodium succinate (anhydrous)
|
|
| 3 |
Ammonium acetate
C2H3O2.H4N 77.083 g/mol
|
0.5 G_PER_L |
CHEBI:62947
ammonium acetate
|
|
| 4 |
Fe(III) citrate
C6H5FeO7 244.944 g/mol
|
0.005 G_PER_L |
CHEBI:144421
iron(III) citrate
|
|
| 5 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.5 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 6 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.4 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 7 |
NaCl
Cl.Na 58.443 g/mol
|
0.4 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 8 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.4 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 9 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.05 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 10 | Vitamin B12 | 0.4 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 11 |
L-Cysteine HCl
C3H7NO2S.HCl 157.622 g/mol
|
0.3 G_PER_L |
CHEBI:91247
L-cysteine hydrochloride
|
|
| 12 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.005 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 13 | Sodium malate | 1 G_PER_L |
CHEBI:91260
disodium malate
|
|
| 14 |
Sodium Thiosulfate
2Na.O3S2 158.111 g/mol
|
0.5 G_PER_L |
CHEBI:132112
sodium thiosulfate
|
|
| 15 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
0.1 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 16 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.03 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 17 |
H3BO3
H3BO3 61.833 g/mol
|
0.3 G_PER_L |
CHEBI:33118
boric acid
|
|
| 18 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.2 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 19 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.01 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 20 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.02 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 21 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.03 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_109_RHODOPSEUDOMONAS_SULFOVIRIDIS_medium (CultureMech:003752)
- rhodopseudomonas_sulfoviridis_medium (CultureMech:000531)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 109 |
| 2026-02-03T11:19:11.242633 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 109 |
| 2026-03-13T06:19:21.932479Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003752 |
| 2026-03-17T06:30:30.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:36.236532+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "RHODOPSEUDOMONAS SULFOVIRIDIS medium" to "rhodopseudomonas_sulfoviridis_medium" for consistent matching |
| 2026-06-05T07:40:18.928306+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 19 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:43.470059+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:04:39.688678+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_109_RHODOPSEUDOMONAS_SULFOVIRIDIS_medium, rhodopseudomonas_sulfoviridis_medium |
| 2026-08-06T03:04:39.688719+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint d5235ac10f169a205c24d6752e707cbd3186e71c23f0d54489bc25f8c2cb5eca |