Overview
- External ontology
- komodo.medium:1183 (source link unavailable) — ROSEICYCLUS medium
- Applications
-
- Microbial cultivation
- pH range
- {'min': 8.0, 'max': 8.5}
- Notes
- Source: KOMODO ModelSEED | ID: 1183 | DSMZ Medium: 1183 (mediadive.medium:1183) | Aerobic: No
Composition
flowchart LR
CultureMech_003903["roseicyclus_medium"]
ing0_KCl["KCl"]
CultureMech_003903 --> ing0_KCl
CHEBI_32588["CHEBI:32588"]
ing0_KCl -.-> CHEBI_32588
ing1_NH4Cl["NH4Cl"]
CultureMech_003903 --> ing1_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing1_NH4Cl -.-> CHEBI_31206
ing2_MgSO4["MgSO4"]
CultureMech_003903 --> ing2_MgSO4
CHEBI_32599["CHEBI:32599"]
ing2_MgSO4 -.-> CHEBI_32599
ing3_Na2SO4["Na2SO4"]
CultureMech_003903 --> ing3_Na2SO4
CHEBI_32149["CHEBI:32149"]
ing3_Na2SO4 -.-> CHEBI_32149
ing4_Malic_acid["Malic acid"]
CultureMech_003903 --> ing4_Malic_acid
CHEBI_6650["CHEBI:6650"]
ing4_Malic_acid -.-> CHEBI_6650
ing5_Na_acetate["Na acetate"]
CultureMech_003903 --> ing5_Na_acetate
CHEBI_32954["CHEBI:32954"]
ing5_Na_acetate -.-> CHEBI_32954
ing6_Yeast_extract["Yeast extract"]
CultureMech_003903 --> ing6_Yeast_extract
ing7_Bacto_peptone["Bacto peptone"]
CultureMech_003903 --> ing7_Bacto_peptone
ing8_K2HPO4["K2HPO4"]
CultureMech_003903 --> ing8_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing8_K2HPO4 -.-> CHEBI_131527
ing9_NaHCO3["NaHCO3"]
CultureMech_003903 --> ing9_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing9_NaHCO3 -.-> CHEBI_32139
ing10_CaCl2["CaCl2"]
CultureMech_003903 --> ing10_CaCl2
CHEBI_3312["CHEBI:3312"]
ing10_CaCl2 -.-> CHEBI_3312
ing11_Nicotinic_acid["Nicotinic acid"]
CultureMech_003903 --> ing11_Nicotinic_acid
CHEBI_15940["CHEBI:15940"]
ing11_Nicotinic_acid -.-> CHEBI_15940
ing12_Thiamine["Thiamine"]
CultureMech_003903 --> ing12_Thiamine
CHEBI_18385["CHEBI:18385"]
ing12_Thiamine -.-> CHEBI_18385
ing13_Biotin["Biotin"]
CultureMech_003903 --> ing13_Biotin
CHEBI_15956["CHEBI:15956"]
ing13_Biotin -.-> CHEBI_15956
ing14_Vitamin_B12["Vitamin B12"]
CultureMech_003903 --> ing14_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing14_Vitamin_B12 -.-> CHEBI_176843
ing15_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_003903 --> ing15_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing15_FeSO4_x_7_H2O -.-> CHEBI_75836
ing16_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_003903 --> ing16_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing16_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing17_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_003903 --> ing17_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing17_MnCl2_x_4_H2O -.-> CHEBI_86368
ing18_H3BO3["H3BO3"]
CultureMech_003903 --> ing18_H3BO3
CHEBI_33118["CHEBI:33118"]
ing18_H3BO3 -.-> CHEBI_33118
ing19_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_003903 --> ing19_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing19_CoCl2_x_6_H2O -.-> CHEBI_53503
ing20_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_003903 --> ing20_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing20_CuCl2_x_2_H2O -.-> CHEBI_86318
ing21_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_003903 --> ing21_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing21_NiCl2_x_6_H2O -.-> CHEBI_34887
ing22_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_003903 --> ing22_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing22_Na2MoO4_x_2_H2O -.-> CHEBI_75213
Ingredients (23)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
KCl
Cl.K 74.551 g/mol
|
0.3 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 2 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.3 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 3 |
MgSO4
Mg.O4S 120.368 g/mol
|
2 G_PER_L |
CHEBI:32599
magnesium sulfate
|
|
| 4 |
Na2SO4
2Na.O4S 142.043 g/mol
|
15 G_PER_L |
CHEBI:32149
sodium sulfate
|
|
| 5 |
Malic acid
C4H6O5 134.087 g/mol
|
1 G_PER_L |
CHEBI:6650
malic acid
|
|
| 6 |
Na acetate
C2H3O2.Na 82.034 g/mol
|
1 G_PER_L |
CHEBI:32954
sodium acetate
|
|
| 7 | Yeast extract | 1 G_PER_L | ||
| 8 | Bacto peptone | 0.5 G_PER_L | ||
| 9 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.3 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 10 |
NaHCO3
CHO3.Na 84.006 g/mol
|
0.5 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 11 |
CaCl2
Ca.2Cl 110.984 g/mol
|
0.05 G_PER_L |
CHEBI:3312
calcium dichloride
|
|
| 12 |
Nicotinic acid
C6H5NO2 123.111 g/mol
|
0.4 G_PER_L |
CHEBI:15940
nicotinic acid
|
|
| 13 |
Thiamine
C12H17N4OS 265.362 g/mol
|
0.4 G_PER_L |
CHEBI:18385
thiamine(1+)
|
|
| 14 |
Biotin
C10H16N2O3S 244.316 g/mol
|
0.08 G_PER_L |
CHEBI:15956
biotin
|
|
| 15 | Vitamin B12 | 0.0005 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 16 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
0.3 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 17 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
0.005 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 18 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.003 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 19 |
H3BO3
H3BO3 61.833 g/mol
|
0.002 G_PER_L |
CHEBI:33118
boric acid
|
|
| 20 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.001 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 21 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.002 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 22 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.003 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 23 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.003 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_1183_ROSEICYCLUS_medium (CultureMech:003903)
- roseicyclus_medium (CultureMech:000625)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1183 |
| 2026-02-03T11:19:14.957091 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1183 |
| 2026-03-13T06:19:23.118505Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003903 |
| 2026-03-17T06:30:42.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:37.617511+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "ROSEICYCLUS medium" to "roseicyclus_medium" for consistent matching |
| 2026-05-20T06:00:49.266585+00:00 | migrate_ph_range.py | MIGRATED_PH_RANGE | ph_range '8.0-8.5' -> {'min': 8.0, 'max': 8.5} |
| 2026-06-05T07:40:19.630053+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 20 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:43.706306+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 6 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:04:41.048210+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_1183_ROSEICYCLUS_medium, roseicyclus_medium |
| 2026-08-06T03:04:41.048254+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint f1d53d237e1833f0d06690ff49983080bda7bca28ca1eace2c46559e02fe31ed |