rhodobacter_thiocapsa_medium

CultureMech:003935 bacterial COMPLEX LIQUID
Original name: RHODOBACTER /THIOCAPSA medium

Overview

External ontology
komodo.medium:1197 (source link unavailable) — RHODOBACTER /THIOCAPSA medium
Applications
  • Microbial cultivation
Synonyms
  • {'name': 'for_dsm_18774', 'source': 'KOMODO', 'source_id': 'komodo.medium:1197.1', 'original_category': 'bacterial'}
  • {'name': 'for_dsm_19780', 'source': 'KOMODO', 'source_id': 'komodo.medium:1197.2', 'original_category': 'bacterial'}
pH
7.2
Notes
Source: KOMODO ModelSEED | ID: 1197 | DSMZ Medium: 1197 (mediadive.medium:1197) | Aerobic: No

Composition

flowchart LR
    CultureMech_003935["rhodobacter_thiocapsa_medium"]
    ing0_Yeast_extract["Yeast extract"]
    CultureMech_003935 --> ing0_Yeast_extract
    ing1_Sodium_pyruvate["Sodium pyruvate"]
    CultureMech_003935 --> ing1_Sodium_pyruvate
    CHEBI_50144["CHEBI:50144"]
    ing1_Sodium_pyruvate -.-> CHEBI_50144
    ing2_KH2PO4["KH2PO4"]
    CultureMech_003935 --> ing2_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing2_KH2PO4 -.-> CHEBI_63036
    ing3_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
    CultureMech_003935 --> ing3_MgCl2_x_6_H2O
    CHEBI_86345["CHEBI:86345"]
    ing3_MgCl2_x_6_H2O -.-> CHEBI_86345
    ing4_NaCl["NaCl"]
    CultureMech_003935 --> ing4_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing4_NaCl -.-> CHEBI_26710
    ing5_NH4Cl["NH4Cl"]
    CultureMech_003935 --> ing5_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing5_NH4Cl -.-> CHEBI_31206
    ing6_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_003935 --> ing6_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing6_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing7_Vitamin_B12["Vitamin B12"]
    CultureMech_003935 --> ing7_Vitamin_B12
    CHEBI_176843["CHEBI:176843"]
    ing7_Vitamin_B12 -.-> CHEBI_176843
    ing8_HCl["HCl"]
    CultureMech_003935 --> ing8_HCl
    CHEBI_17883["CHEBI:17883"]
    ing8_HCl -.-> CHEBI_17883
    ing9_ZnCl2["ZnCl2"]
    CultureMech_003935 --> ing9_ZnCl2
    CHEBI_49976["CHEBI:49976"]
    ing9_ZnCl2 -.-> CHEBI_49976
    ing10_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_003935 --> ing10_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing10_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing11_H3BO3["H3BO3"]
    CultureMech_003935 --> ing11_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing11_H3BO3 -.-> CHEBI_33118
    ing12_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_003935 --> ing12_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing12_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing13_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
    CultureMech_003935 --> ing13_CuCl2_x_2_H2O
    CHEBI_86318["CHEBI:86318"]
    ing13_CuCl2_x_2_H2O -.-> CHEBI_86318
    ing14_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_003935 --> ing14_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing14_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing15_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_003935 --> ing15_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing15_Na2MoO4_x_2_H2O -.-> CHEBI_75213

Ingredients (16)

# Ingredient Concentration Ontology Notes
1 Yeast extract 0.4 G_PER_L
2 Sodium pyruvate
C3H3O3.Na 110.044 g/mol
3 G_PER_L CHEBI:50144
sodium pyruvate
3 KH2PO4
H2O4P.K 136.084 g/mol
0.5 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
4 MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
0.5 G_PER_L CHEBI:86345
magnesium dichloride hexahydrate
5 NaCl
Cl.Na 58.443 g/mol
0.4 G_PER_L CHEBI:26710
sodium chloride
6 NH4Cl
Cl.H4N 53.492 g/mol
0.6 G_PER_L CHEBI:31206
ammonium chloride
7 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.05 G_PER_L CHEBI:86158
calcium chloride dihydrate
8 Vitamin B12 1 G_PER_L CHEBI:176843
vitamin B12
9 HCl
HCl 36.461 g/mol
1 G_PER_L CHEBI:17883
hydrogen chloride
10 ZnCl2
2Cl.Zn 136.296 g/mol
0.07 G_PER_L CHEBI:49976
zinc dichloride
11 MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
0.1 G_PER_L CHEBI:86368
manganese(II) chloride tetrahydrate
12 H3BO3
H3BO3 61.833 g/mol
0.06 G_PER_L CHEBI:33118
boric acid
13 CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
0.2 G_PER_L CHEBI:53503
cobalt chloride hexahydrate
14 CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
0.02 G_PER_L CHEBI:86318
copper(II) chloride dihydrate
15 NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
0.02 G_PER_L CHEBI:34887
nickel dichloride
16 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
0.04 G_PER_L CHEBI:75213
sodium molybdate dihydrate

Target organisms

No target organisms are recorded.

Provenance

Merged from 4 source records.

TimestampCuratorActionNotes
2026-01-27T01:15:01.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 1197
2026-02-03T11:19:04.043248 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 1197
2026-03-13T06:19:23.428424Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:003935
2026-03-17T06:30:08.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:37.987319+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "RHODOBACTER /THIOCAPSA medium" to "rhodobacter_thiocapsa_medium" for consistent matching
2026-06-05T07:40:19.726276+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 15 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:43.749142+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:04:41.188217+00:00 recipe-merger Merged 4 duplicate recipes into canonical record Sources: KOMODO_1197_RHODOBACTER_THIOCAPSA_medium, for_dsm_18774, for_dsm_19780, rhodobacter_thiocapsa_medium
2026-08-06T03:04:41.188282+00:00 merge_recipes.py MERGED_RECIPES merged 4 source recipe(s) on fingerprint 5f134beabbed19dd53091ae3293dff0e0974b795bd83df00a709acd51ca5ba17