Overview
- External ontology
- komodo.medium:1306 (source link unavailable) — DEINOCOCCUS medium
- Applications
-
- Microbial cultivation
- pH
- 7.0
- Notes
- Source: KOMODO ModelSEED | ID: 1306 | DSMZ Medium: 1306 (mediadive.medium:1306) | Aerobic: No
Composition
flowchart LR
CultureMech_004061["deinococcus_medium"]
ing0_Tryptone["Tryptone"]
CultureMech_004061 --> ing0_Tryptone
ing1_Yeast_extract["Yeast extract"]
CultureMech_004061 --> ing1_Yeast_extract
ing2_Dextrose["Dextrose"]
CultureMech_004061 --> ing2_Dextrose
CHEBI_17634["CHEBI:17634"]
ing2_Dextrose -.-> CHEBI_17634
ing3_Maltose["Maltose"]
CultureMech_004061 --> ing3_Maltose
CHEBI_17306["CHEBI:17306"]
ing3_Maltose -.-> CHEBI_17306
ing4_DL_Methionine["DL-Methionine"]
CultureMech_004061 --> ing4_DL_Methionine
CHEBI_16811["CHEBI:16811"]
ing4_DL_Methionine -.-> CHEBI_16811
ing5_Biotin["Biotin"]
CultureMech_004061 --> ing5_Biotin
CHEBI_15956["CHEBI:15956"]
ing5_Biotin -.-> CHEBI_15956
ing6_Folic_acid["Folic acid"]
CultureMech_004061 --> ing6_Folic_acid
CHEBI_27470["CHEBI:27470"]
ing6_Folic_acid -.-> CHEBI_27470
ing7_Pyridoxine_hydrochloride["Pyridoxine hydrochloride"]
CultureMech_004061 --> ing7_Pyridoxine_hydrochloride
CHEBI_30961["CHEBI:30961"]
ing7_Pyridoxine_hydrochloride -.-> CHEBI_30961
ing8_Thiamine_HCl_x_2_H2O["Thiamine-HCl x 2 H2O"]
CultureMech_004061 --> ing8_Thiamine_HCl_x_2_H2O
CHEBI_132751["CHEBI:132751"]
ing8_Thiamine_HCl_x_2_H2O -.-> CHEBI_132751
ing9_Riboflavin["Riboflavin"]
CultureMech_004061 --> ing9_Riboflavin
CHEBI_17015["CHEBI:17015"]
ing9_Riboflavin -.-> CHEBI_17015
ing10_Nicotinic_acid["Nicotinic acid"]
CultureMech_004061 --> ing10_Nicotinic_acid
CHEBI_15940["CHEBI:15940"]
ing10_Nicotinic_acid -.-> CHEBI_15940
ing11_D_Calcium_pantothenate["D-Calcium pantothenate"]
CultureMech_004061 --> ing11_D_Calcium_pantothenate
CHEBI_31345["CHEBI:31345"]
ing11_D_Calcium_pantothenate -.-> CHEBI_31345
ing12_Vitamin_B12["Vitamin B12"]
CultureMech_004061 --> ing12_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing12_Vitamin_B12 -.-> CHEBI_176843
ing13_p_Aminobenzoic_acid["p-Aminobenzoic acid"]
CultureMech_004061 --> ing13_p_Aminobenzoic_acid
CHEBI_30753["CHEBI:30753"]
ing13_p_Aminobenzoic_acid -.-> CHEBI_30753
ing14_Lipoic_acid["Lipoic acid"]
CultureMech_004061 --> ing14_Lipoic_acid
CHEBI_16494["CHEBI:16494"]
ing14_Lipoic_acid -.-> CHEBI_16494
ing15_HCl["HCl"]
CultureMech_004061 --> ing15_HCl
CHEBI_17883["CHEBI:17883"]
ing15_HCl -.-> CHEBI_17883
ing16_FeCl2_x_4_H2O["FeCl2 x 4 H2O"]
CultureMech_004061 --> ing16_FeCl2_x_4_H2O
CHEBI_86249["CHEBI:86249"]
ing16_FeCl2_x_4_H2O -.-> CHEBI_86249
ing17_ZnCl2["ZnCl2"]
CultureMech_004061 --> ing17_ZnCl2
CHEBI_49976["CHEBI:49976"]
ing17_ZnCl2 -.-> CHEBI_49976
ing18_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_004061 --> ing18_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing18_MnCl2_x_4_H2O -.-> CHEBI_86368
ing19_H3BO3["H3BO3"]
CultureMech_004061 --> ing19_H3BO3
CHEBI_33118["CHEBI:33118"]
ing19_H3BO3 -.-> CHEBI_33118
ing20_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_004061 --> ing20_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing20_CoCl2_x_6_H2O -.-> CHEBI_53503
ing21_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_004061 --> ing21_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing21_CuCl2_x_2_H2O -.-> CHEBI_86318
ing22_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_004061 --> ing22_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing22_NiCl2_x_6_H2O -.-> CHEBI_34887
ing23_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_004061 --> ing23_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing23_Na2MoO4_x_2_H2O -.-> CHEBI_75213
Ingredients (24)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Tryptone | 5 G_PER_L | ||
| 2 | Yeast extract | 2.5 G_PER_L | ||
| 3 |
Dextrose
C6H12O6 180.156 g/mol
|
1 G_PER_L |
CHEBI:17634
D-glucose
|
|
| 4 |
Maltose
C12H22O11 342.297 g/mol
|
1 G_PER_L |
CHEBI:17306
maltose
|
|
| 5 |
DL-Methionine
C5H11NO2S 149.215 g/mol
|
1 G_PER_L |
CHEBI:16811
methionine
|
|
| 6 |
Biotin
C10H16N2O3S 244.316 g/mol
|
0.002 G_PER_L |
CHEBI:15956
biotin
|
|
| 7 |
Folic acid
C19H19N7O6 441.404 g/mol
|
0.002 G_PER_L |
CHEBI:27470
folic acid
|
|
| 8 |
Pyridoxine hydrochloride
C8H11NO3.HCl 205.641 g/mol
|
0.01 G_PER_L |
CHEBI:30961
pyridoxine hydrochloride
|
|
| 9 |
Thiamine-HCl x 2 H2O
C12H18N4OS.2Cl.2H2O 373.306 g/mol
|
0.005 G_PER_L |
CHEBI:132751
thiamine hydrochloride dihydrate
|
|
| 10 |
Riboflavin
C17H20N4O6 376.369 g/mol
|
0.005 G_PER_L |
CHEBI:17015
riboflavin
|
|
| 11 |
Nicotinic acid
C6H5NO2 123.111 g/mol
|
0.005 G_PER_L |
CHEBI:15940
nicotinic acid
|
|
| 12 |
D-Calcium pantothenate
2C9H16NO5.Ca 476.536 g/mol
|
0.005 G_PER_L |
CHEBI:31345
Calcium pantothenate
|
|
| 13 | Vitamin B12 | 0.0001 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 14 |
p-Aminobenzoic acid
C7H7NO2 137.138 g/mol
|
0.005 G_PER_L |
CHEBI:30753
4-aminobenzoic acid
|
|
| 15 |
Lipoic acid
C8H14O2S2 206.332 g/mol
|
0.005 G_PER_L |
CHEBI:16494
lipoic acid
|
|
| 16 |
HCl
HCl 36.461 g/mol
|
2.5 G_PER_L |
CHEBI:17883
hydrogen chloride
|
|
| 17 |
FeCl2 x 4 H2O
Cl2Fe.4H2O 198.811 g/mol
|
1.5 G_PER_L |
CHEBI:86249
iron dichloride tetrahydrate
|
|
| 18 |
ZnCl2
2Cl.Zn 136.296 g/mol
|
0.07 G_PER_L |
CHEBI:49976
zinc dichloride
|
|
| 19 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.1 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 20 |
H3BO3
H3BO3 61.833 g/mol
|
0.006 G_PER_L |
CHEBI:33118
boric acid
|
|
| 21 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.19 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 22 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.002 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 23 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.024 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 24 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.036 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_1306_DEINOCOCCUS_medium (CultureMech:004061)
- deinococcus_medium (CultureMech:000768)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:02.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1306 |
| 2026-02-03T11:19:08.182093 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1306 |
| 2026-03-13T06:19:24.518615Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:004061 |
| 2026-03-17T06:30:21.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:39.272096+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "DEINOCOCCUS medium" to "deinococcus_medium" for consistent matching |
| 2026-06-05T07:40:20.765076+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 22 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:44.076580+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:04:43.044952+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_1306_DEINOCOCCUS_medium, deinococcus_medium |
| 2026-08-06T03:04:43.044996+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint 1ee3d9c3880e8a0fe92649dabc3cb8587ef6dd0a6a286b5c260027e3f8fb1cb9 |