cytophaga_marine_medium

CultureMech:004200 bacterial COMPLEX SOLID_AGAR
Original name: CYTOPHAGA (marine) medium

Overview

External ontology
komodo.medium:172 (source link unavailable) — CYTOPHAGA (marine) medium
Applications
  • Microbial cultivation
Synonyms
  • {'name': 'cy_s2_medium', 'source': 'KOMODO', 'source_id': 'komodo.medium:172a', 'original_category': 'bacterial'}
  • {'name': 'medium_172_modified_for_dsm_6480', 'source': 'KOMODO', 'source_id': 'komodo.medium:172_6480', 'original_category': 'bacterial'}
pH
7.2
Notes
Source: KOMODO ModelSEED | ID: 172 | DSMZ Medium: 172 (mediadive.medium:172) | Aerobic: No

Composition

flowchart LR
    CultureMech_004200["cytophaga_marine_medium"]
    ing0_Yeast_extract["Yeast extract"]
    CultureMech_004200 --> ing0_Yeast_extract
    ing1_Tryptone["Tryptone"]
    CultureMech_004200 --> ing1_Tryptone
    ing2_NaCl["NaCl"]
    CultureMech_004200 --> ing2_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing2_NaCl -.-> CHEBI_26710
    ing3_KCl["KCl"]
    CultureMech_004200 --> ing3_KCl
    CHEBI_32588["CHEBI:32588"]
    ing3_KCl -.-> CHEBI_32588
    ing4_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_004200 --> ing4_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing4_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing5_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
    CultureMech_004200 --> ing5_MgCl2_x_6_H2O
    CHEBI_86345["CHEBI:86345"]
    ing5_MgCl2_x_6_H2O -.-> CHEBI_86345
    ing6_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_004200 --> ing6_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing6_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing7_NaHCO3["NaHCO3"]
    CultureMech_004200 --> ing7_NaHCO3
    CHEBI_32139["CHEBI:32139"]
    ing7_NaHCO3 -.-> CHEBI_32139
    ing8_Agar["Agar"]
    CultureMech_004200 --> ing8_Agar
    CHEBI_2509["CHEBI:2509"]
    ing8_Agar -.-> CHEBI_2509

Ingredients (9)

# Ingredient Concentration Ontology Notes
1 Yeast extract 1 G_PER_L
2 Tryptone 1 G_PER_L
3 NaCl
Cl.Na 58.443 g/mol
24.7 G_PER_L CHEBI:26710
sodium chloride
4 KCl
Cl.K 74.551 g/mol
0.7 G_PER_L CHEBI:32588
potassium chloride
5 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
6.3 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
6 MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
4.6 G_PER_L CHEBI:86345
magnesium dichloride hexahydrate
7 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
1.2 G_PER_L CHEBI:86158
calcium chloride dihydrate
8 NaHCO3
CHO3.Na 84.006 g/mol
0.2 G_PER_L CHEBI:32139
sodium hydrogencarbonate
9 Agar 15 G_PER_L CHEBI:2509
agar

Target organisms

No target organisms are recorded.

Provenance

Merged from 4 source records.

TimestampCuratorActionNotes
2026-01-27T01:15:02.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 172
2026-02-03T11:19:03.293428 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 172
2026-03-13T06:19:25.796901Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:004200
2026-03-17T06:30:05.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:40.756019+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "CYTOPHAGA (marine) medium" to "cytophaga_marine_medium" for consistent matching
2026-06-05T07:40:55.229454+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 7 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-08-06T03:04:43.937354+00:00 recipe-merger Merged 4 duplicate recipes into canonical record Sources: KOMODO_172a_CY_S2_medium, cytophaga_marine_medium, medium_172_modified_for_dsm_6480, cytophaga_marine_medium
2026-08-06T03:04:43.937394+00:00 merge_recipes.py MERGED_RECIPES merged 4 source recipe(s) on fingerprint e8c012d38381b5b792bf92a45458aaf8c693969abe1c3a6b2becefb2809a6919