Overview
- External ontology
- komodo.medium:526 (source link unavailable) — CLOSTRIDIUM AMINOVALERICUM medium
- Applications
-
- Microbial cultivation
- pH range
- {'min': 7.6, 'max': 7.8}
- Notes
- pH buffer: Na2CO3 | Source: KOMODO ModelSEED | ID: 526 | DSMZ Medium: 526 (mediadive.medium:526) | Aerobic: Yes
Composition
flowchart LR
CultureMech_005889["clostridium_aminovalericum_medium"]
ing0_5_Aminovaleric_acid["5-Aminovaleric acid"]
CultureMech_005889 --> ing0_5_Aminovaleric_acid
CHEBI_15887["CHEBI:15887"]
ing0_5_Aminovaleric_acid -.-> CHEBI_15887
ing1_K2HPO4["K2HPO4"]
CultureMech_005889 --> ing1_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing1_K2HPO4 -.-> CHEBI_131527
ing2_Yeast_extract["Yeast extract"]
CultureMech_005889 --> ing2_Yeast_extract
ing3_Sodium_resazurin["Sodium resazurin"]
CultureMech_005889 --> ing3_Sodium_resazurin
CHEBI_8806["CHEBI:8806"]
ing3_Sodium_resazurin -.-> CHEBI_8806
ing4_NaHCO3["NaHCO3"]
CultureMech_005889 --> ing4_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing4_NaHCO3 -.-> CHEBI_32139
ing5_L_Cysteine_HCl_x_H2O["L-Cysteine HCl x H2O"]
CultureMech_005889 --> ing5_L_Cysteine_HCl_x_H2O
CHEBI_91248["CHEBI:91248"]
ing5_L_Cysteine_HCl_x_H2O -.-> CHEBI_91248
ing6_Nitrilotriacetic_acid["Nitrilotriacetic acid"]
CultureMech_005889 --> ing6_Nitrilotriacetic_acid
CHEBI_44557["CHEBI:44557"]
ing6_Nitrilotriacetic_acid -.-> CHEBI_44557
ing7_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_005889 --> ing7_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing7_MgSO4_x_7_H2O -.-> CHEBI_31795
ing8_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_005889 --> ing8_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing8_CaCl2_x_2_H2O -.-> CHEBI_86158
ing9_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_005889 --> ing9_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing9_FeSO4_x_7_H2O -.-> CHEBI_75836
ing10_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_005889 --> ing10_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing10_NiCl2_x_6_H2O -.-> CHEBI_34887
ing11_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_005889 --> ing11_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing11_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing12_MnSO4_x_H2O["MnSO4 x H2O"]
CultureMech_005889 --> ing12_MnSO4_x_H2O
CHEBI_86364["CHEBI:86364"]
ing12_MnSO4_x_H2O -.-> CHEBI_86364
ing13_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_005889 --> ing13_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing13_CoCl2_x_6_H2O -.-> CHEBI_53503
ing14_VOSO4_x_5_H2O["VOSO4 x 5 H2O"]
CultureMech_005889 --> ing14_VOSO4_x_5_H2O
CHEBI_132758["CHEBI:132758"]
ing14_VOSO4_x_5_H2O -.-> CHEBI_132758
ing15_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_005889 --> ing15_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing15_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing16_CuSO4_x_5_H2O["CuSO4 x 5 H2O"]
CultureMech_005889 --> ing16_CuSO4_x_5_H2O
CHEBI_31440["CHEBI:31440"]
ing16_CuSO4_x_5_H2O -.-> CHEBI_31440
ing17_Na2CO3["Na2CO3"]
CultureMech_005889 --> ing17_Na2CO3
CHEBI_29377["CHEBI:29377"]
ing17_Na2CO3 -.-> CHEBI_29377
Ingredients (18)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
5-Aminovaleric acid
C5H11NO2 117.148 g/mol
|
15 G_PER_L |
CHEBI:15887
5-aminopentanoic acid
|
|
| 2 |
K2HPO4
HO4P.2K 174.174 g/mol
|
8.7 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 3 | Yeast extract | 7.5 G_PER_L | ||
| 4 |
Sodium resazurin
C12H7NO4 229.191 g/mol
|
0.0005 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 5 |
NaHCO3
CHO3.Na 84.006 g/mol
|
2.5 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 6 |
L-Cysteine HCl x H2O
C3H7NO2S.H2O.HCl 175.637 g/mol
|
0.25 G_PER_L |
CHEBI:91248
L-cysteine hydrochloride hydrate
|
|
| 7 |
Nitrilotriacetic acid
C6H9NO6 191.139 g/mol
|
5 G_PER_L |
CHEBI:44557
nitrilotriacetic acid
|
|
| 8 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
24 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 9 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.5 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 10 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
0.5 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 11 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.25 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 12 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
0.44 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 13 |
MnSO4 x H2O
H2O.Mn.O4S 169.016 g/mol
|
0.25 G_PER_L |
CHEBI:86364
manganese(II) sulfate monohydrate
|
|
| 14 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.25 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 15 |
VOSO4 x 5 H2O
5H2O.O4S.OV 253.081 g/mol
|
0.25 G_PER_L |
CHEBI:132758
vanadyl sulfate pentahydrate
|
|
| 16 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.25 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 17 |
CuSO4 x 5 H2O
Cu.5H2O.O4S 249.684 g/mol
|
0.12 G_PER_L |
CHEBI:31440
copper(II) sulfate pentahydrate
|
|
| 18 |
Na2CO3
CO3.2Na 105.988 g/mol
|
variable VARIABLE |
CHEBI:29377
sodium carbonate
|
pH adjustment (extracted from notes) |
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- clostridium_aminovalericum_medium (CultureMech:005889)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 526 |
| 2026-02-03T11:19:00.603453 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 526 |
| 2026-03-13T03:08:53.389189Z | data-quality-cleanup-v1.0 | Data quality fixes | Added pH buffer: Na2CO3 |
| 2026-03-13T06:19:37.105960Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:005889 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: Na2CO3 |
| 2026-03-17T06:29:57.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:53.807671+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "CLOSTRIDIUM AMINOVALERICUM medium" to "clostridium_aminovalericum_medium" for consistent matching |
| 2026-05-16T09:03:27.614267+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-05-20T06:01:11.727530+00:00 | migrate_ph_range.py | MIGRATED_PH_RANGE | ph_range '7.6-7.8' -> {'min': 7.6, 'max': 7.8} |
| 2026-06-05T07:40:53.764717+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 16 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:54.638304+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:27.857051+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint 8587eb46259efc852f57896ab64318073457e226175d8a15cb1d2e315a2fde08 |