Overview
- External ontology
- komodo.medium:598 (source link unavailable) — HALOVIBRIO VARIABILIS medium
- Applications
-
- Microbial cultivation
- pH
- 7.5
- High-metal flag
- True
- Notes
- Source: KOMODO ModelSEED | ID: 598 | DSMZ Medium: 598 (mediadive.medium:598) | Aerobic: No
Composition
flowchart LR
CultureMech_006079["halovibrio_variabilis_medium"]
ing0_NaCl["NaCl"]
CultureMech_006079 --> ing0_NaCl
CHEBI_26710["CHEBI:26710"]
ing0_NaCl -.-> CHEBI_26710
ing1_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_006079 --> ing1_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing1_MgSO4_x_7_H2O -.-> CHEBI_31795
ing2_KCl["KCl"]
CultureMech_006079 --> ing2_KCl
CHEBI_32588["CHEBI:32588"]
ing2_KCl -.-> CHEBI_32588
ing3_Yeast_extract["Yeast extract"]
CultureMech_006079 --> ing3_Yeast_extract
ing4_Proteose_peptone["Proteose peptone"]
CultureMech_006079 --> ing4_Proteose_peptone
ing5_Biotin["Biotin"]
CultureMech_006079 --> ing5_Biotin
CHEBI_15956["CHEBI:15956"]
ing5_Biotin -.-> CHEBI_15956
ing6_Folic_acid["Folic acid"]
CultureMech_006079 --> ing6_Folic_acid
CHEBI_27470["CHEBI:27470"]
ing6_Folic_acid -.-> CHEBI_27470
ing7_Pyridoxine_hydrochloride["Pyridoxine hydrochloride"]
CultureMech_006079 --> ing7_Pyridoxine_hydrochloride
CHEBI_30961["CHEBI:30961"]
ing7_Pyridoxine_hydrochloride -.-> CHEBI_30961
ing8_Thiamine_HCl_x_2_H2O["Thiamine-HCl x 2 H2O"]
CultureMech_006079 --> ing8_Thiamine_HCl_x_2_H2O
CHEBI_132751["CHEBI:132751"]
ing8_Thiamine_HCl_x_2_H2O -.-> CHEBI_132751
ing9_Riboflavin["Riboflavin"]
CultureMech_006079 --> ing9_Riboflavin
CHEBI_17015["CHEBI:17015"]
ing9_Riboflavin -.-> CHEBI_17015
ing10_Nicotinic_acid["Nicotinic acid"]
CultureMech_006079 --> ing10_Nicotinic_acid
CHEBI_15940["CHEBI:15940"]
ing10_Nicotinic_acid -.-> CHEBI_15940
ing11_Pantothenic_acid["Pantothenic acid"]
CultureMech_006079 --> ing11_Pantothenic_acid
CHEBI_7916["CHEBI:7916"]
ing11_Pantothenic_acid -.-> CHEBI_7916
ing12_Vitamin_B12["Vitamin B12"]
CultureMech_006079 --> ing12_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing12_Vitamin_B12 -.-> CHEBI_176843
ing13_p_Aminobenzoic_acid["p-Aminobenzoic acid"]
CultureMech_006079 --> ing13_p_Aminobenzoic_acid
CHEBI_30753["CHEBI:30753"]
ing13_p_Aminobenzoic_acid -.-> CHEBI_30753
ing14_Lipoic_acid["Lipoic acid"]
CultureMech_006079 --> ing14_Lipoic_acid
CHEBI_16494["CHEBI:16494"]
ing14_Lipoic_acid -.-> CHEBI_16494
ing15_Na2_EDTA["Na2-EDTA"]
CultureMech_006079 --> ing15_Na2_EDTA
CHEBI_64734["CHEBI:64734"]
ing15_Na2_EDTA -.-> CHEBI_64734
ing16_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_006079 --> ing16_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing16_FeSO4_x_7_H2O -.-> CHEBI_75836
ing17_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_006079 --> ing17_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing17_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing18_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_006079 --> ing18_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing18_MnCl2_x_4_H2O -.-> CHEBI_86368
ing19_H3BO3["H3BO3"]
CultureMech_006079 --> ing19_H3BO3
CHEBI_33118["CHEBI:33118"]
ing19_H3BO3 -.-> CHEBI_33118
ing20_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_006079 --> ing20_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing20_CoCl2_x_6_H2O -.-> CHEBI_53503
ing21_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_006079 --> ing21_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing21_CuCl2_x_2_H2O -.-> CHEBI_86318
ing22_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_006079 --> ing22_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing22_NiCl2_x_6_H2O -.-> CHEBI_34887
ing23_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_006079 --> ing23_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing23_Na2MoO4_x_2_H2O -.-> CHEBI_75213
Ingredients (24)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
NaCl
Cl.Na 58.443 g/mol
|
95 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 2 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
81 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 3 |
KCl
Cl.K 74.551 g/mol
|
1 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 4 | Yeast extract | 7.5 G_PER_L | ||
| 5 | Proteose peptone | 2.5 G_PER_L | ||
| 6 |
Biotin
C10H16N2O3S 244.316 g/mol
|
0.0002 G_PER_L |
CHEBI:15956
biotin
|
|
| 7 |
Folic acid
C19H19N7O6 441.404 g/mol
|
0.0002 G_PER_L |
CHEBI:27470
folic acid
|
|
| 8 |
Pyridoxine hydrochloride
C8H11NO3.HCl 205.641 g/mol
|
0.001 G_PER_L |
CHEBI:30961
pyridoxine hydrochloride
|
|
| 9 |
Thiamine-HCl x 2 H2O
C12H18N4OS.2Cl.2H2O 373.306 g/mol
|
0.0005 G_PER_L |
CHEBI:132751
thiamine hydrochloride dihydrate
|
|
| 10 |
Riboflavin
C17H20N4O6 376.369 g/mol
|
0.0005 G_PER_L |
CHEBI:17015
riboflavin
|
|
| 11 |
Nicotinic acid
C6H5NO2 123.111 g/mol
|
0.0005 G_PER_L |
CHEBI:15940
nicotinic acid
|
|
| 12 |
Pantothenic acid
C9H17NO5 219.237 g/mol
|
0.0005 G_PER_L |
CHEBI:7916
pantothenic acid
|
|
| 13 | Vitamin B12 | 1e-05 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 14 |
p-Aminobenzoic acid
C7H7NO2 137.138 g/mol
|
0.0005 G_PER_L |
CHEBI:30753
4-aminobenzoic acid
|
|
| 15 |
Lipoic acid
C8H14O2S2 206.332 g/mol
|
0.0005 G_PER_L |
CHEBI:16494
lipoic acid
|
|
| 16 |
Na2-EDTA
C10H14N2O8.2Na 336.208 g/mol
|
0.5 G_PER_L |
CHEBI:64734
EDTA disodium salt (anhydrous)
|
|
| 17 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
0.2 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 18 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
0.1 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 19 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.03 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 20 |
H3BO3
H3BO3 61.833 g/mol
|
0.3 G_PER_L |
CHEBI:33118
boric acid
|
|
| 21 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.2 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 22 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.01 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 23 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.02 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 24 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.03 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_598_HALOVIBRIO_VARIABILIS_medium (CultureMech:006079)
- halovibrio_variabilis_medium (CultureMech:001725)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 598 |
| 2026-02-03T11:19:07.180230 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 598 |
| 2026-03-13T06:19:38.137021Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:006079 |
| 2026-03-17T06:30:18.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:55.016076+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "HALOVIBRIO VARIABILIS medium" to "halovibrio_variabilis_medium" for consistent matching |
| 2026-06-05T07:40:24.819454+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 22 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:45.345296+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:04:55.947514+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_598_HALOVIBRIO_VARIABILIS_medium, halovibrio_variabilis_medium |
| 2026-08-06T03:04:55.947557+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint fff827dac9f6f923b50d224b592b5fff6677b9ca9b376c156d30e23885685dcf |