Overview
- External ontology
- komodo.medium:833 (source link unavailable) — DEHALOSPIRILLUM medium
- Applications
-
- Microbial cultivation
- pH range
- {'min': 7.3, 'max': 7.7}
- High-metal flag
- True
- Notes
- Source: KOMODO ModelSEED | ID: 833 | DSMZ Medium: 833 (mediadive.medium:833) | Aerobic: Yes
Composition
flowchart LR
CultureMech_006625["dehalospirillum_medium"]
ing0_Na2SO4["Na2SO4"]
CultureMech_006625 --> ing0_Na2SO4
CHEBI_32149["CHEBI:32149"]
ing0_Na2SO4 -.-> CHEBI_32149
ing1_KH2PO4["KH2PO4"]
CultureMech_006625 --> ing1_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing1_KH2PO4 -.-> CHEBI_63036
ing2_NH4Cl["NH4Cl"]
CultureMech_006625 --> ing2_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing2_NH4Cl -.-> CHEBI_31206
ing3_NaCl["NaCl"]
CultureMech_006625 --> ing3_NaCl
CHEBI_26710["CHEBI:26710"]
ing3_NaCl -.-> CHEBI_26710
ing4_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
CultureMech_006625 --> ing4_MgCl2_x_6_H2O
CHEBI_86345["CHEBI:86345"]
ing4_MgCl2_x_6_H2O -.-> CHEBI_86345
ing5_KCl["KCl"]
CultureMech_006625 --> ing5_KCl
CHEBI_32588["CHEBI:32588"]
ing5_KCl -.-> CHEBI_32588
ing6_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_006625 --> ing6_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing6_CaCl2_x_2_H2O -.-> CHEBI_86158
ing7_Yeast_extract["Yeast extract"]
CultureMech_006625 --> ing7_Yeast_extract
ing8_Sodium_resazurin["Sodium resazurin"]
CultureMech_006625 --> ing8_Sodium_resazurin
CHEBI_8806["CHEBI:8806"]
ing8_Sodium_resazurin -.-> CHEBI_8806
ing9_Potassium_phosphate_buffer["Potassium phosphate buffer"]
CultureMech_006625 --> ing9_Potassium_phosphate_buffer
ing10_Na2CO3["Na2CO3"]
CultureMech_006625 --> ing10_Na2CO3
CHEBI_29377["CHEBI:29377"]
ing10_Na2CO3 -.-> CHEBI_29377
ing11_Na_pyruvate["Na-pyruvate"]
CultureMech_006625 --> ing11_Na_pyruvate
CHEBI_50144["CHEBI:50144"]
ing11_Na_pyruvate -.-> CHEBI_50144
ing12_Na2_fumarate["Na2-fumarate"]
CultureMech_006625 --> ing12_Na2_fumarate
CHEBI_115156["CHEBI:115156"]
ing12_Na2_fumarate -.-> CHEBI_115156
ing13_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_006625 --> ing13_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing13_FeSO4_x_7_H2O -.-> CHEBI_75836
ing14_H2SO4["H2SO4"]
CultureMech_006625 --> ing14_H2SO4
CHEBI_26836["CHEBI:26836"]
ing14_H2SO4 -.-> CHEBI_26836
ing15_L_Cysteine_HCl_x_H2O["L-Cysteine HCl x H2O"]
CultureMech_006625 --> ing15_L_Cysteine_HCl_x_H2O
CHEBI_91248["CHEBI:91248"]
ing15_L_Cysteine_HCl_x_H2O -.-> CHEBI_91248
ing16_HCl["HCl"]
CultureMech_006625 --> ing16_HCl
CHEBI_17883["CHEBI:17883"]
ing16_HCl -.-> CHEBI_17883
ing17_FeCl2_x_4_H2O["FeCl2 x 4 H2O"]
CultureMech_006625 --> ing17_FeCl2_x_4_H2O
CHEBI_86249["CHEBI:86249"]
ing17_FeCl2_x_4_H2O -.-> CHEBI_86249
ing18_ZnCl2["ZnCl2"]
CultureMech_006625 --> ing18_ZnCl2
CHEBI_49976["CHEBI:49976"]
ing18_ZnCl2 -.-> CHEBI_49976
ing19_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_006625 --> ing19_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing19_MnCl2_x_4_H2O -.-> CHEBI_86368
ing20_H3BO3["H3BO3"]
CultureMech_006625 --> ing20_H3BO3
CHEBI_33118["CHEBI:33118"]
ing20_H3BO3 -.-> CHEBI_33118
ing21_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_006625 --> ing21_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing21_CoCl2_x_6_H2O -.-> CHEBI_53503
ing22_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_006625 --> ing22_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing22_CuCl2_x_2_H2O -.-> CHEBI_86318
ing23_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_006625 --> ing23_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing23_NiCl2_x_6_H2O -.-> CHEBI_34887
ing24_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_006625 --> ing24_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing24_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing25_NaOH["NaOH"]
CultureMech_006625 --> ing25_NaOH
CHEBI_32145["CHEBI:32145"]
ing25_NaOH -.-> CHEBI_32145
ing26_Na2SeO3_x_5_H2O["Na2SeO3 x 5 H2O"]
CultureMech_006625 --> ing26_Na2SeO3_x_5_H2O
CHEBI_131361["CHEBI:131361"]
ing26_Na2SeO3_x_5_H2O -.-> CHEBI_131361
ing27_Na2WO4_x_2_H2O["Na2WO4 x 2 H2O"]
CultureMech_006625 --> ing27_Na2WO4_x_2_H2O
CHEBI_63939["CHEBI:63939"]
ing27_Na2WO4_x_2_H2O -.-> CHEBI_63939
ing28_Biotin["Biotin"]
CultureMech_006625 --> ing28_Biotin
CHEBI_15956["CHEBI:15956"]
ing28_Biotin -.-> CHEBI_15956
ing29_Folic_acid["Folic acid"]
CultureMech_006625 --> ing29_Folic_acid
CHEBI_27470["CHEBI:27470"]
ing29_Folic_acid -.-> CHEBI_27470
CultureMech_006625 --> more["...11 more"]
Ingredients (41)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Na2SO4
2Na.O4S 142.043 g/mol
|
0.784753 G_PER_L |
CHEBI:32149
sodium sulfate
|
|
| 2 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.224215 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 3 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.280269 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 4 |
NaCl
Cl.Na 58.443 g/mol
|
0.280269 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 5 |
MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
|
0.44843 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
|
| 6 |
KCl
Cl.K 74.551 g/mol
|
0.560538 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 7 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.168161 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 8 | Yeast extract | 2.24215 G_PER_L | ||
| 9 |
Sodium resazurin
C12H7NO4 229.191 g/mol
|
0.000560538 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 10 | Potassium phosphate buffer | 10 G_PER_L | ||
| 11 |
Na2CO3
CO3.2Na 105.988 g/mol
|
50 G_PER_L |
CHEBI:29377
sodium carbonate
|
|
| 12 |
Na-pyruvate
C3H3O3.Na 110.044 g/mol
|
225 G_PER_L |
CHEBI:50144
sodium pyruvate
|
|
| 13 |
Na2-fumarate
C4H2O4.2Na 160.036 g/mol
|
160 G_PER_L |
CHEBI:115156
disodium fumarate
|
|
| 14 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
4.28571 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 15 |
H2SO4
H2O4S 98.079 g/mol
|
3 G_PER_L |
CHEBI:26836
sulfuric acid
|
|
| 16 |
L-Cysteine HCl x H2O
C3H7NO2S.H2O.HCl 175.637 g/mol
|
50 G_PER_L |
CHEBI:91248
L-cysteine hydrochloride hydrate
|
|
| 17 |
HCl
HCl 36.461 g/mol
|
2.5 G_PER_L |
CHEBI:17883
hydrogen chloride
|
|
| 18 |
FeCl2 x 4 H2O
Cl2Fe.4H2O 198.811 g/mol
|
1.5 G_PER_L |
CHEBI:86249
iron dichloride tetrahydrate
|
|
| 19 |
ZnCl2
2Cl.Zn 136.296 g/mol
|
0.07 G_PER_L |
CHEBI:49976
zinc dichloride
|
|
| 20 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.1 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 21 |
H3BO3
H3BO3 61.833 g/mol
|
0.006 G_PER_L |
CHEBI:33118
boric acid
|
|
| 22 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.19 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 23 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.002 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 24 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.024 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 25 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.036 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 26 |
NaOH
HO.Na 39.997 g/mol
|
0.5 G_PER_L |
CHEBI:32145
sodium hydroxide
|
|
| 27 |
Na2SeO3 x 5 H2O
5H2O.2Na.O3Se 263.012 g/mol
|
0.003 G_PER_L |
CHEBI:131361
disodium selenite pentahydrate
|
|
| 28 |
Na2WO4 x 2 H2O
2H2O.2Na.O4W 329.846 g/mol
|
0.004 G_PER_L |
CHEBI:63939
sodium tungstate dihydrate
|
|
| 29 |
Biotin
C10H16N2O3S 244.316 g/mol
|
0.02 G_PER_L |
CHEBI:15956
biotin
|
|
| 30 |
Folic acid
C19H19N7O6 441.404 g/mol
|
0.02 G_PER_L |
CHEBI:27470
folic acid
|
|
| 31 |
Pyridoxine hydrochloride
C8H11NO3.HCl 205.641 g/mol
|
0.4 G_PER_L |
CHEBI:30961
pyridoxine hydrochloride
|
[Merged 2 duplicates: 0.1, 0.3] |
| 32 |
Thiamine HCl
C12H17N4OS.Cl.HCl 337.276 g/mol
|
0.05 G_PER_L |
CHEBI:49105
thiamine hydrochloride
|
|
| 33 |
Riboflavin
C17H20N4O6 376.369 g/mol
|
0.05 G_PER_L |
CHEBI:17015
riboflavin
|
|
| 34 |
Nicotinic acid
C6H5NO2 123.111 g/mol
|
0.25 G_PER_L |
CHEBI:15940
nicotinic acid
|
[Merged 2 duplicates: 0.05, 0.2] |
| 35 |
Calcium D-(+)-pantothenate
2C9H16NO5.Ca 476.536 g/mol
|
0.05 G_PER_L |
CHEBI:31345
Calcium pantothenate
|
|
| 36 | Vitamin B12 | 0.101 G_PER_L |
CHEBI:176843
vitamin B12
|
[Merged 2 duplicates: 0.001, 0.1] |
| 37 |
p-Aminobenzoic acid
C7H7NO2 137.138 g/mol
|
0.13 G_PER_L |
CHEBI:30753
4-aminobenzoic acid
|
[Merged 2 duplicates: 0.05, 0.08] |
| 38 |
(DL)-alpha-Lipoic acid
C8H14O2S2 206.332 g/mol
|
0.05 G_PER_L |
CHEBI:16494
lipoic acid
|
|
| 39 |
D-(+)-biotin
C10H16N2O3S 244.316 g/mol
|
0.02 G_PER_L |
CHEBI:15956
biotin
|
|
| 40 |
Calcium pantothenate
2C9H16NO5.Ca 476.536 g/mol
|
0.1 G_PER_L |
CHEBI:31345
Calcium pantothenate
|
|
| 41 |
Thiamine-HCl x 2 H2O
C12H18N4OS.2Cl.2H2O 373.306 g/mol
|
0.2 G_PER_L |
CHEBI:132751
thiamine hydrochloride dihydrate
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_833_DEHALOSPIRILLUM_medium (CultureMech:006625)
- dehalospirillum_medium (CultureMech:001990)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 833 |
| 2026-02-03T11:19:07.722908 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 833 |
| 2026-02-06T05:10:34.616125Z | invalid-chebi-removal | Removed 1 invalid CHEBI ID(s) | Removed CHEBI IDs with invalid format (7+ digits) from MicrobeMediaParam source data |
| 2026-03-13T03:09:12.719406Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 4 duplicate ingredient(s) |
| 2026-03-13T06:19:42.462847Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:006625 |
| 2026-03-17T06:30:19.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:00.088354+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "DEHALOSPIRILLUM medium" to "dehalospirillum_medium" for consistent matching |
| 2026-05-20T06:00:54.201537+00:00 | migrate_ph_range.py | MIGRATED_PH_RANGE | ph_range '7.3-7.7' -> {'min': 7.3, 'max': 7.7} |
| 2026-06-05T07:40:26.929091+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 37 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:46.057763+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 7 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:00.530012+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_833_DEHALOSPIRILLUM_medium, dehalospirillum_medium |
| 2026-08-06T03:05:00.530055+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint ff011652dc721f98dfdfb5c1948b36f4e6b8f3e29625f11b6460768925c649bd |