Overview
- External ontology
- MEDIADB:125 (source link unavailable) — 'M9 with 8 g/l glucose (kazan
- Applications
-
- Cultivation of genome-sequenced organisms
- Metabolic modeling
- Systems biology research
- Synonyms
-
- {'name': 'm9_with_16_g_l_glucose_kazan', 'source': 'unknown', 'source_id': 'MEDIADB:126', 'original_category': 'bacterial'}
- {'name': 'm9_with_2_g_l_glucose_kazan', 'source': 'unknown', 'source_id': 'MEDIADB:123', 'original_category': 'bacterial'}
- {'name': 'm9_with_32_g_l_glucose_kazan', 'source': 'unknown', 'source_id': 'MEDIADB:127', 'original_category': 'bacterial'}
- {'name': 'm9_with_4_g_l_glucose_kazan', 'source': 'unknown', 'source_id': 'MEDIADB:124', 'original_category': 'bacterial'}
- Notes
- Source: MediaDB (Chemically-defined media for genome-sequenced organisms) Reference: https://mediadb.systemsbiology.net/
Composition
flowchart LR
CultureMech_007013["m9_with_8_g_l_glucose_kazan"]
ing0_L_Leucine["L-Leucine"]
CultureMech_007013 --> ing0_L_Leucine
CHEBI_15603["CHEBI:15603"]
ing0_L_Leucine -.-> CHEBI_15603
ing1_L_Proline["L-Proline"]
CultureMech_007013 --> ing1_L_Proline
CHEBI_17203["CHEBI:17203"]
ing1_L_Proline -.-> CHEBI_17203
ing2_beta_D_Glucose["beta-D-Glucose"]
CultureMech_007013 --> ing2_beta_D_Glucose
ing3_Ampicillin["Ampicillin"]
CultureMech_007013 --> ing3_Ampicillin
CHEBI_28971["CHEBI:28971"]
ing3_Ampicillin -.-> CHEBI_28971
ing4_Calcium_chloride_anhydrous["Calcium chloride anhydrous"]
CultureMech_007013 --> ing4_Calcium_chloride_anhydrous
CHEBI_3312["CHEBI:3312"]
ing4_Calcium_chloride_anhydrous -.-> CHEBI_3312
ing5_Dibasic_sodium_phosphate["Dibasic sodium phosphate"]
CultureMech_007013 --> ing5_Dibasic_sodium_phosphate
CHEBI_34683["CHEBI:34683"]
ing5_Dibasic_sodium_phosphate -.-> CHEBI_34683
ing6_Sodium_chloride["Sodium chloride"]
CultureMech_007013 --> ing6_Sodium_chloride
CHEBI_26710["CHEBI:26710"]
ing6_Sodium_chloride -.-> CHEBI_26710
ing7_Thiamine_HCl["Thiamine HCl"]
CultureMech_007013 --> ing7_Thiamine_HCl
CHEBI_49105["CHEBI:49105"]
ing7_Thiamine_HCl -.-> CHEBI_49105
ing8_Potassium_dihydrogen_phosphate["Potassium dihydrogen phosphate"]
CultureMech_007013 --> ing8_Potassium_dihydrogen_phosphate
CHEBI_63036["CHEBI:63036"]
ing8_Potassium_dihydrogen_phosphate -.-> CHEBI_63036
ing9_Magnesium_sulfate["Magnesium sulfate"]
CultureMech_007013 --> ing9_Magnesium_sulfate
CHEBI_32599["CHEBI:32599"]
ing9_Magnesium_sulfate -.-> CHEBI_32599
ing10_Ammonium_chloride["Ammonium chloride"]
CultureMech_007013 --> ing10_Ammonium_chloride
CHEBI_31206["CHEBI:31206"]
ing10_Ammonium_chloride -.-> CHEBI_31206
Ingredients (11)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
L-Leucine
C6H13NO2 131.175 g/mol
|
0.15247 MILLIMOLAR |
CHEBI:15603
L-leucine
|
Cross-references: KEGG:leu-L |
| 2 |
L-Proline
C5H9NO2 115.132 g/mol
|
0.17371 MILLIMOLAR |
CHEBI:17203
L-proline
|
Cross-references: KEGG:pro-L |
| 3 | beta-D-Glucose | 88.8099 MILLIMOLAR | ||
| 4 |
Ampicillin
C16H19N3O4S 349.412 g/mol
|
0.0001431 MILLIMOLAR |
CHEBI:28971
ampicillin
|
|
| 5 |
Calcium chloride anhydrous
Ca.2Cl 110.984 g/mol
|
0.1 MILLIMOLAR |
CHEBI:3312
calcium dichloride
|
|
| 6 |
Dibasic sodium phosphate
HO4P.2Na 141.958 g/mol
|
42.2654 MILLIMOLAR |
CHEBI:34683
disodium hydrogenphosphate
|
|
| 7 |
Sodium chloride
Cl.Na 58.443 g/mol
|
8.55578 MILLIMOLAR |
CHEBI:26710
sodium chloride
|
|
| 8 |
Thiamine HCl
C12H17N4OS.Cl.HCl 337.276 g/mol
|
1000.0 MILLIMOLAR |
CHEBI:49105
thiamine hydrochloride
|
|
| 9 |
Potassium dihydrogen phosphate
H2O4P.K 136.084 g/mol
|
22.0449 MILLIMOLAR |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 10 |
Magnesium sulfate
Mg.O4S 120.368 g/mol
|
1.0 MILLIMOLAR |
CHEBI:32599
magnesium sulfate
|
|
| 11 |
Ammonium chloride
Cl.H4N 53.492 g/mol
|
18.6947 MILLIMOLAR |
CHEBI:31206
ammonium chloride
|
Preparation
- Dissolve all ingredients in distilled water to specified concentrations
- Adjust pH if specified in original formulation
- Sterilize by filtration (0.22 μm) to preserve heat-sensitive components
Target organisms
No target organisms are recorded.
Provenance
Merged from 5 source records.
- m9_with_16_g_l_glucose_kazan (CultureMech:007014)
- m9_with_2_g_l_glucose_kazan (CultureMech:007011)
- m9_with_32_g_l_glucose_kazan (CultureMech:007015)
- m9_with_4_g_l_glucose_kazan (CultureMech:007012)
- m9_with_8_g_l_glucose_kazan (CultureMech:007013)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T07:21:43.718733Z | mediadb-import | Imported from MediaDB | Source: MediaDB (Institute for Systems Biology), Medium ID: 125, Reference: Mazumdar et al. (2014) PLOS One |
| 2026-03-13T06:19:45.589364Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007013 |
| 2026-03-17T06:30:04.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:03.679950+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "'M9 with 8 g/l glucose (kazan" to "m9_with_8_g_l_glucose_kazan" for consistent matching |
| 2026-06-05T07:41:12.289233+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 7 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-08-06T03:05:41.403860+00:00 | recipe-merger | Merged 5 duplicate recipes into canonical record | Sources: m9_with_16_g_l_glucose_kazan, m9_with_2_g_l_glucose_kazan, m9_with_32_g_l_glucose_kazan, m9_with_4_g_l_glucose_kazan, m9_with_8_g_l_glucose_kazan |
| 2026-08-06T03:05:41.403915+00:00 | merge_recipes.py | MERGED_RECIPES | merged 5 source recipe(s) on fingerprint 9988bbc04964abfae1eafbd4da206056bb5d8387fb60193fc3c7673c94982b6f |