Overview
- External ontology
- MEDIADB:394 (source link unavailable) — 'Model-designed medium (Baart 2007
- Applications
-
- Cultivation of genome-sequenced organisms
- Metabolic modeling
- Systems biology research
- Notes
- Source: MediaDB (Chemically-defined media for genome-sequenced organisms) Reference: https://mediadb.systemsbiology.net/
Composition
flowchart LR
CultureMech_007298["model_designed_medium_baart_2007"]
ing0_Ammonium_chloride["Ammonium chloride"]
CultureMech_007298 --> ing0_Ammonium_chloride
CHEBI_31206["CHEBI:31206"]
ing0_Ammonium_chloride -.-> CHEBI_31206
ing1_Cupric_sulfate["Cupric sulfate"]
CultureMech_007298 --> ing1_Cupric_sulfate
CHEBI_23414["CHEBI:23414"]
ing1_Cupric_sulfate -.-> CHEBI_23414
ing2_Cobalt_chloride["Cobalt chloride"]
CultureMech_007298 --> ing2_Cobalt_chloride
CHEBI_35696["CHEBI:35696"]
ing2_Cobalt_chloride -.-> CHEBI_35696
ing3_Zinc_sulfate["Zinc sulfate"]
CultureMech_007298 --> ing3_Zinc_sulfate
CHEBI_35176["CHEBI:35176"]
ing3_Zinc_sulfate -.-> CHEBI_35176
ing4_Calcium_chloride_anhydrous["Calcium chloride anhydrous"]
CultureMech_007298 --> ing4_Calcium_chloride_anhydrous
CHEBI_3312["CHEBI:3312"]
ing4_Calcium_chloride_anhydrous -.-> CHEBI_3312
ing5_Manganese_chloride["Manganese chloride"]
CultureMech_007298 --> ing5_Manganese_chloride
CHEBI_63041["CHEBI:63041"]
ing5_Manganese_chloride -.-> CHEBI_63041
ing6_Sodium_molybdate["Sodium molybdate"]
CultureMech_007298 --> ing6_Sodium_molybdate
CHEBI_75215["CHEBI:75215"]
ing6_Sodium_molybdate -.-> CHEBI_75215
ing7_Sodium_thiosulfate["Sodium thiosulfate"]
CultureMech_007298 --> ing7_Sodium_thiosulfate
CHEBI_132112["CHEBI:132112"]
ing7_Sodium_thiosulfate -.-> CHEBI_132112
ing8_D_Glucose["D-Glucose"]
CultureMech_007298 --> ing8_D_Glucose
CHEBI_17634["CHEBI:17634"]
ing8_D_Glucose -.-> CHEBI_17634
ing9_Potassium_dibasic_phosphate["Potassium dibasic phosphate"]
CultureMech_007298 --> ing9_Potassium_dibasic_phosphate
CHEBI_131527["CHEBI:131527"]
ing9_Potassium_dibasic_phosphate -.-> CHEBI_131527
ing10_Magnesium_sulfate["Magnesium sulfate"]
CultureMech_007298 --> ing10_Magnesium_sulfate
CHEBI_32599["CHEBI:32599"]
ing10_Magnesium_sulfate -.-> CHEBI_32599
ing11_Sodium_chloride["Sodium chloride"]
CultureMech_007298 --> ing11_Sodium_chloride
CHEBI_26710["CHEBI:26710"]
ing11_Sodium_chloride -.-> CHEBI_26710
ing12__Iron_III["'Iron(III"]
CultureMech_007298 --> ing12__Iron_III
ing13_Potassium_dihydrogen_phosphate["Potassium dihydrogen phosphate"]
CultureMech_007298 --> ing13_Potassium_dihydrogen_phosphate
CHEBI_63036["CHEBI:63036"]
ing13_Potassium_dihydrogen_phosphate -.-> CHEBI_63036
Ingredients (14)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Ammonium chloride
Cl.H4N 53.492 g/mol
|
23.5 MILLIMOLAR |
CHEBI:31206
ammonium chloride
|
|
| 2 |
Cupric sulfate
Cu.O4S 159.609 g/mol
|
8e-05 MILLIMOLAR |
CHEBI:23414
copper(II) sulfate
|
|
| 3 |
Cobalt chloride
2Cl.Co 129.839 g/mol
|
8e-05 MILLIMOLAR |
CHEBI:35696
cobalt dichloride
|
|
| 4 |
Zinc sulfate
O4S.Zn 161.453 g/mol
|
0.00034 MILLIMOLAR |
CHEBI:35176
zinc sulfate
|
|
| 5 |
Calcium chloride anhydrous
Ca.2Cl 110.984 g/mol
|
0.136 MILLIMOLAR |
CHEBI:3312
calcium dichloride
|
|
| 6 |
Manganese chloride
Cl2Mn 125.844 g/mol
|
0.0008 MILLIMOLAR |
CHEBI:63041
manganese(II) chloride
|
|
| 7 |
Sodium molybdate
MoO4.2Na 205.916 g/mol
|
0.00016 MILLIMOLAR |
CHEBI:75215
sodium molybdate (anhydrous)
|
|
| 8 |
Sodium thiosulfate
2Na.O3S2 158.111 g/mol
|
0.38 MILLIMOLAR |
CHEBI:132112
sodium thiosulfate
|
|
| 9 |
D-Glucose
C6H12O6 180.156 g/mol
|
31.1 MILLIMOLAR |
CHEBI:17634
D-glucose
|
Cross-references: KEGG:glc_D |
| 10 |
Potassium dibasic phosphate
HO4P.2K 174.174 g/mol
|
12.5 MILLIMOLAR |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 11 |
Magnesium sulfate
Mg.O4S 120.368 g/mol
|
2.43 MILLIMOLAR |
CHEBI:32599
magnesium sulfate
|
|
| 12 |
Sodium chloride
Cl.Na 58.443 g/mol
|
102.0 MILLIMOLAR |
CHEBI:26710
sodium chloride
|
|
| 13 | 'Iron(III | 0.3 MILLIMOLAR | ||
| 14 |
Potassium dihydrogen phosphate
H2O4P.K 136.084 g/mol
|
4.58 MILLIMOLAR |
CHEBI:63036
potassium dihydrogen phosphate
|
Preparation
- Dissolve all ingredients in distilled water to specified concentrations
- Adjust pH if specified in original formulation
- Sterilize by filtration (0.22 μm) to preserve heat-sensitive components
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- model_designed_medium_baart_2007 (CultureMech:007298)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T07:21:46.195298Z | mediadb-import | Imported from MediaDB | Source: MediaDB (Institute for Systems Biology), Medium ID: 394, Reference: Mazumdar et al. (2014) PLOS One |
| 2026-03-13T06:19:47.531470Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007298 |
| 2026-03-17T06:30:39.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:05.794742+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "'Model-designed medium (Baart 2007" to "model_designed_medium_baart_2007" for consistent matching |
| 2026-06-05T07:41:35.941929+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 6 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-08-06T03:05:47.693578+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint 3860abcf4108c667977eab8ed90c8ca28e1c857d6488ff389592afe37af1a464 |