alkaline_xylan_medium

CultureMech:007758 bacterial COMPLEX LIQUID
Original name: Alkaline Xylan Medium

Overview

External ontology
TOGO:M122 — Alkaline Xylan Medium
Applications
  • Microbial cultivation
High-metal flag
True
Notes
Source: https://togomedium.org/medium/M122 Original source: JCM - JCM_M130 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=130

Composition

flowchart LR
    CultureMech_007758["alkaline_xylan_medium"]
    ing0_Distilled_water["Distilled water"]
    CultureMech_007758 --> ing0_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing0_Distilled_water -.-> CHEBI_15377
    ing1_MgSO4_7H2O["MgSO4・7H2O"]
    CultureMech_007758 --> ing1_MgSO4_7H2O
    CHEBI_31795["CHEBI:31795"]
    ing1_MgSO4_7H2O -.-> CHEBI_31795
    ing2_Yeast_extract["Yeast extract"]
    CultureMech_007758 --> ing2_Yeast_extract
    ing3_CaCl2_2H2O["CaCl2・2H2O"]
    CultureMech_007758 --> ing3_CaCl2_2H2O
    CHEBI_86158["CHEBI:86158"]
    ing3_CaCl2_2H2O -.-> CHEBI_86158
    ing4_K2HPO4["K2HPO4"]
    CultureMech_007758 --> ing4_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing4_K2HPO4 -.-> CHEBI_131527
    ing5_Resazurin["Resazurin"]
    CultureMech_007758 --> ing5_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing5_Resazurin -.-> CHEBI_8806
    ing6_FeSO4_7H2O["FeSO4・7H2O"]
    CultureMech_007758 --> ing6_FeSO4_7H2O
    CHEBI_75836["CHEBI:75836"]
    ing6_FeSO4_7H2O -.-> CHEBI_75836
    ing7_MnSO4_xH2O["MnSO4・xH2O"]
    CultureMech_007758 --> ing7_MnSO4_xH2O
    CHEBI_86360["CHEBI:86360"]
    ing7_MnSO4_xH2O -.-> CHEBI_86360
    ing8_NH4NO3["NH4NO3"]
    CultureMech_007758 --> ing8_NH4NO3
    CHEBI_63038["CHEBI:63038"]
    ing8_NH4NO3 -.-> CHEBI_63038
    ing9_Xylan__Tokyo_Kasei_or_Sigma_["Xylan (Tokyo Kasei or Sigma)"]
    CultureMech_007758 --> ing9_Xylan__Tokyo_Kasei_or_Sigma_
    ing10_Polypepton__Nihon_Pharm__Co__["Polypepton (Nihon Pharm. Co.)"]
    CultureMech_007758 --> ing10_Polypepton__Nihon_Pharm__Co__

Ingredients (11)

# Ingredient Concentration Ontology Notes
1 Distilled water
H2O 18.015 g/mol
1 G_PER_L CHEBI:15377
water
 Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component
2 MgSO4・7H2O
7H2O.Mg.O4S 246.473 g/mol
200 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
 Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component
3 Yeast extract 3 G_PER_L Role: Nutrient source; Properties: Undefined component
4 CaCl2・2H2O
Ca.2Cl.2H2O 147.014 g/mol
100 G_PER_L CHEBI:86158
calcium chloride dihydrate
 Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component
5 K2HPO4
HO4P.2K 174.174 g/mol
1 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
 Role: Buffer; Properties: Simple component, Inorganic compound, Defined component
6 Resazurin
C12H7NO4 229.191 g/mol
1 G_PER_L CHEBI:8806
Resazurin
 Role: pH dependent redox indicator; Properties: Defined component, Simple component, Organic compound
7 FeSO4・7H2O
Fe.7H2O.O4S 278.013 g/mol
5 G_PER_L CHEBI:75836
iron(2+) sulfate heptahydrate
 Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component
8 MnSO4・xH2O
Mn.O4S 151.001 g/mol
5 G_PER_L CHEBI:86360
manganese(II) sulfate
 Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component
9 NH4NO3
H4N.NO3 80.043 g/mol
2 G_PER_L CHEBI:63038
ammonium nitrate
 Role: Nitrogen source; Properties: Simple component, Defined component, Inorganic compound
10 Xylan (Tokyo Kasei or Sigma) 10 G_PER_L Role: Carbon source; Properties: Undefined component
11 Polypepton (Nihon Pharm. Co.) 300 G_PER_L Properties: Undefined component

Solutions

NaCO3 solution

Dose: variable VARIABLE

Role: Buffer; Properties: Defined component, Inorganic compound, Solution

Target organisms

No target organisms are recorded.

Provenance

Merged from 1 source record.

TimestampCuratorActionNotes
2026-01-27T06:35:54.157009Z togo-import Imported from TOGO Medium Source: JCM, ID: M122
2026-01-28T19:48:24.742645Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-02-03T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default concentration for ingredient: NaCO3 solution
2026-03-09T08:04:40.938831+00:00 solution-migrator-v1.0 Migrated solutions from ingredients to solutions array Moved 1 solution(s) from ingredients
2026-03-13T06:19:51.235702Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:007758
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default solution name
2026-03-17T06:30:17.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:09.651621+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "Alkaline Xylan Medium" to "alkaline_xylan_medium" for consistent matching
2026-05-16T09:03:08.669609+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=2
2026-06-05T07:40:31.561086+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 4 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T06:57:22.083020+00:00 mgso4-heptahydrate-term-fix-v1.0 Corrected MgSO4·7H2O primary term grounding to heptahydrate Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched.
2026-06-10T07:46:47.311206+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:05:06.939916+00:00 merge_recipes.py MERGED_RECIPES merged 1 source recipe(s) on fingerprint 1a3f733c5d575cc42783fead0fc4003b1e3568eb33e6265c169f420095762de7