Overview
- External ontology
- TOGO:M123 — Rhodopseudomonas Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M123 Original source: JCM - JCM_M131 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=131
Composition
flowchart LR
CultureMech_007769["rhodopseudomonas_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_007769 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_MgSO4_7H2O["MgSO4・7H2O"]
CultureMech_007769 --> ing1_MgSO4_7H2O
CHEBI_31795["CHEBI:31795"]
ing1_MgSO4_7H2O -.-> CHEBI_31795
ing2_Yeast_extract["Yeast extract"]
CultureMech_007769 --> ing2_Yeast_extract
ing3_KH2PO4["KH2PO4"]
CultureMech_007769 --> ing3_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing3_KH2PO4 -.-> CHEBI_63036
ing4_K2HPO4["K2HPO4"]
CultureMech_007769 --> ing4_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing4_K2HPO4 -.-> CHEBI_131527
ing5__NH4_2SO4["(NH4)2SO4"]
CultureMech_007769 --> ing5__NH4_2SO4
CHEBI_62946["CHEBI:62946"]
ing5__NH4_2SO4 -.-> CHEBI_62946
ing6_CaCl2["CaCl2"]
CultureMech_007769 --> ing6_CaCl2
CHEBI_3312["CHEBI:3312"]
ing6_CaCl2 -.-> CHEBI_3312
ing7_Sodium_succinate["Sodium succinate"]
CultureMech_007769 --> ing7_Sodium_succinate
CHEBI_63675["CHEBI:63675"]
ing7_Sodium_succinate -.-> CHEBI_63675
ing8_Ferric_citrate["Ferric citrate"]
CultureMech_007769 --> ing8_Ferric_citrate
CHEBI_144421["CHEBI:144421"]
ing8_Ferric_citrate -.-> CHEBI_144421
ing9_EDTA["EDTA"]
CultureMech_007769 --> ing9_EDTA
CHEBI_4735["CHEBI:4735"]
ing9_EDTA -.-> CHEBI_4735
Ingredients (10)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
1 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component |
| 2 |
MgSO4・7H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.2 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
Role: Mineral source; Properties: Simple component, Inorganic compound, Defined component |
| 3 | Yeast extract | 0.5 G_PER_L | Role: Nutrient source; Properties: Undefined component | |
| 4 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.6 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
Role: Buffer; Properties: Defined component, Simple component, Inorganic compound |
| 5 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.9 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
Role: Buffer; Properties: Defined component, Simple component, Inorganic compound |
| 6 |
(NH4)2SO4
2H4N.O4S 132.141 g/mol
|
1.25 G_PER_L |
CHEBI:62946
ammonium sulfate
|
Role: Nitrogen source; Properties: Simple component, Inorganic compound, Defined component |
| 7 |
CaCl2
Ca.2Cl 110.984 g/mol
|
70 G_PER_L |
CHEBI:3312
calcium dichloride
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 8 |
Sodium succinate
C4H4O4.2Na 162.052 g/mol
|
2.5 G_PER_L |
CHEBI:63675
sodium succinate (anhydrous)
|
Role: Growth factor; Properties: Simple component, Organic compound, Defined component |
| 9 |
Ferric citrate
C6H5FeO7 244.944 g/mol
|
3 G_PER_L |
CHEBI:144421
iron(III) citrate
|
Role: Mineral source; Properties: Organic compound, Simple component, Defined component |
| 10 |
EDTA
C10H16N2O8 292.244 g/mol
|
3 G_PER_L |
CHEBI:4735
ethylenediaminetetraacetic acid
|
Properties: Defined component, Organic compound, Simple component |
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- TOGO_M123_Rhodopseudomonas_Medium (CultureMech:007769)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:54.179352Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M123 |
| 2026-01-28T19:48:27.052414Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-13T06:19:51.317481Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007769 |
| 2026-03-17T06:30:22.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:09.738950+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Rhodopseudomonas Medium" to "rhodopseudomonas_medium" for consistent matching |
| 2026-06-05T07:40:31.644156+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 8 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T06:57:22.154912+00:00 | mgso4-heptahydrate-term-fix-v1.0 | Corrected MgSO4·7H2O primary term grounding to heptahydrate | Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched. |
| 2026-06-10T07:46:47.343187+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:07.005367+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint e3f624b7aec526436ced3052c41ac9048af2321547b31d1ffaa6f5b1b1642c54 |