Overview
- External ontology
- TOGO:M1257 — Methylotenera Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M1257 Original source: JCM - JCM_M1173-2 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=1173
Composition
flowchart LR
CultureMech_007788["methylotenera_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_007788 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_MgSO4_7H2O["MgSO4・7H2O"]
CultureMech_007788 --> ing1_MgSO4_7H2O
CHEBI_31795["CHEBI:31795"]
ing1_MgSO4_7H2O -.-> CHEBI_31795
ing2_NaCl["NaCl"]
CultureMech_007788 --> ing2_NaCl
CHEBI_26710["CHEBI:26710"]
ing2_NaCl -.-> CHEBI_26710
ing3_CaCl2_2H2O["CaCl2・2H2O"]
CultureMech_007788 --> ing3_CaCl2_2H2O
CHEBI_86158["CHEBI:86158"]
ing3_CaCl2_2H2O -.-> CHEBI_86158
ing4_K2HPO4["K2HPO4"]
CultureMech_007788 --> ing4_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing4_K2HPO4 -.-> CHEBI_131527
ing5_MgCl2_6H2O["MgCl2・6H2O"]
CultureMech_007788 --> ing5_MgCl2_6H2O
CHEBI_86345["CHEBI:86345"]
ing5_MgCl2_6H2O -.-> CHEBI_86345
ing6_KCl["KCl"]
CultureMech_007788 --> ing6_KCl
CHEBI_32588["CHEBI:32588"]
ing6_KCl -.-> CHEBI_32588
ing7_NiCl2_6H2O["NiCl2・6H2O"]
CultureMech_007788 --> ing7_NiCl2_6H2O
CHEBI_34887["CHEBI:34887"]
ing7_NiCl2_6H2O -.-> CHEBI_34887
ing8_CuSO4_5H2O["CuSO4・5H2O"]
CultureMech_007788 --> ing8_CuSO4_5H2O
CHEBI_31440["CHEBI:31440"]
ing8_CuSO4_5H2O -.-> CHEBI_31440
ing9_Na2SeO3_5H2O["Na2SeO3・5H2O"]
CultureMech_007788 --> ing9_Na2SeO3_5H2O
CHEBI_131361["CHEBI:131361"]
ing9_Na2SeO3_5H2O -.-> CHEBI_131361
ing10_Na2WO4_2H2O["Na2WO4・2H2O"]
CultureMech_007788 --> ing10_Na2WO4_2H2O
CHEBI_63939["CHEBI:63939"]
ing10_Na2WO4_2H2O -.-> CHEBI_63939
ing11_Fe_NH4_2_SO4_2_6H2O["Fe(NH4)2(SO4)2・6H2O"]
CultureMech_007788 --> ing11_Fe_NH4_2_SO4_2_6H2O
CHEBI_76181["CHEBI:76181"]
ing11_Fe_NH4_2_SO4_2_6H2O -.-> CHEBI_76181
ing12_agar["agar"]
CultureMech_007788 --> ing12_agar
CHEBI_2509["CHEBI:2509"]
ing12_agar -.-> CHEBI_2509
ing13_50___v_v__Methanol["50% (v/v) Methanol"]
CultureMech_007788 --> ing13_50___v_v__Methanol
Ingredients (14)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
1 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Simple component, Inorganic compound, Defined component |
| 2 |
MgSO4・7H2O
7H2O.Mg.O4S 246.473 g/mol
|
3.4 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 3 |
NaCl
Cl.Na 58.443 g/mol
|
25 G_PER_L |
CHEBI:26710
sodium chloride
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 4 |
CaCl2・2H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.14 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 5 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.14 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
Role: Buffer; Properties: Inorganic compound, Defined component, Simple component |
| 6 |
MgCl2・6H2O
2Cl.6H2O.Mg 203.301 g/mol
|
4.18 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
Role: Mineral source; Properties: Simple component, Inorganic compound, Defined component |
| 7 |
KCl
Cl.K 74.551 g/mol
|
0.33 G_PER_L |
CHEBI:32588
potassium chloride
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 8 |
NiCl2・6H2O
Cl2Ni 129.599 g/mol
|
0.5 G_PER_L |
CHEBI:34887
nickel dichloride
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 9 |
CuSO4・5H2O
Cu.5H2O.O4S 249.684 g/mol
|
0.25 G_PER_L |
CHEBI:31440
copper(II) sulfate pentahydrate
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 10 |
Na2SeO3・5H2O
5H2O.2Na.O3Se 263.012 g/mol
|
0.5 G_PER_L |
CHEBI:131361
disodium selenite pentahydrate
|
Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component |
| 11 |
Na2WO4・2H2O
2H2O.2Na.O4W 329.846 g/mol
|
1.1 G_PER_L |
CHEBI:63939
sodium tungstate dihydrate
|
Role: Mineral source; Properties: Simple component, Inorganic compound, Defined component |
| 12 |
Fe(NH4)2(SO4)2・6H2O
Fe.6H2O.2H4N.2O4S 392.139 g/mol
|
10 G_PER_L |
CHEBI:76181
ferrous ammonium sulfate hexahydrate
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 13 | agar | 15 G_PER_L |
CHEBI:2509
agar
|
Role: Solidifying component |
| 14 | 50% (v/v) Methanol | 10 G_PER_L | Role: Solvating media; Properties: Defined component, Organic compound, Solution |
Solutions
Trace minerals (see Medium [M142])
Dose: 10 G_PER_L
Cross-reference to Medium M142
Trace vitamins (see Medium [M190])
Dose: 1 G_PER_L
Cross-reference to Medium M190
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- TOGO_M1257_Methylotenera_Medium (CultureMech:007788)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:54.234450Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M1257 |
| 2026-01-28T19:48:16.335679Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-09T08:04:26.962335+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 2 solution(s) from ingredients |
| 2026-03-13T06:19:51.476057Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007788 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name; Added default solution name |
| 2026-03-17T06:30:00.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:09.902352+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Methylotenera Medium" to "methylotenera_medium" for consistent matching |
| 2026-05-16T09:03:08.898926+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-06-05T07:40:31.812285+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 5 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T06:57:22.292604+00:00 | mgso4-heptahydrate-term-fix-v1.0 | Corrected MgSO4·7H2O primary term grounding to heptahydrate | Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched. |
| 2026-06-10T07:46:47.411931+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:07.201294+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint 8386954090d59db19bb8c0f7e387caed8b17583a793dee6dd0f7101d67888cf8 |