fundidesulfovibrio_magnetotactcus_medium

CultureMech:007826 bacterial COMPLEX LIQUID
Original name: Fundidesulfovibrio Magnetotactcus Medium

Overview

External ontology
TOGO:M1291 — Fundidesulfovibrio Magnetotactcus Medium
Applications
  • Microbial cultivation
Notes
Source: https://togomedium.org/medium/M1291 Original source: JCM - JCM_M1205 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=1205

Composition

flowchart LR
    CultureMech_007826["fundidesulfovibrio_magnetotactcus_medium"]
    ing0_Distilled_water["Distilled water"]
    CultureMech_007826 --> ing0_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing0_Distilled_water -.-> CHEBI_15377
    ing1_MgSO4_7H2O["MgSO4·7H2O"]
    CultureMech_007826 --> ing1_MgSO4_7H2O
    CHEBI_31795["CHEBI:31795"]
    ing1_MgSO4_7H2O -.-> CHEBI_31795
    ing2_Yeast_extract["Yeast extract"]
    CultureMech_007826 --> ing2_Yeast_extract
    ing3_NH4Cl["NH4Cl"]
    CultureMech_007826 --> ing3_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing3_NH4Cl -.-> CHEBI_31206
    ing4_Resazurin["Resazurin"]
    CultureMech_007826 --> ing4_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing4_Resazurin -.-> CHEBI_8806
    ing5_Casamino_acids__BD_Difco_["Casamino acids (BD-Difco)"]
    CultureMech_007826 --> ing5_Casamino_acids__BD_Difco_
    ing6_N2["N2"]
    CultureMech_007826 --> ing6_N2
    CHEBI_17997["CHEBI:17997"]
    ing6_N2 -.-> CHEBI_17997
    ing7_0_25_M_Potassium_phosphate_buffer__pH_7_0_["0.25 M Potassium phosphate buffer (pH 7.0)"]
    CultureMech_007826 --> ing7_0_25_M_Potassium_phosphate_buffer__pH_7_0_
    ing8_FeCl3_6H2O["FeCl3·6H2O"]
    CultureMech_007826 --> ing8_FeCl3_6H2O
    CHEBI_86254["CHEBI:86254"]
    ing8_FeCl3_6H2O -.-> CHEBI_86254
    ing9_Quinic_acid["Quinic acid"]
    CultureMech_007826 --> ing9_Quinic_acid
    CHEBI_26493["CHEBI:26493"]
    ing9_Quinic_acid -.-> CHEBI_26493

Ingredients (10)

# Ingredient Concentration Ontology Notes
1 Distilled water
H2O 18.015 g/mol
1007.0 G_PER_L CHEBI:15377
water
 Role: Solvating media; Properties: Simple component, Inorganic compound, Defined component [Merged 2 duplicates: 957.0, 50.0]
2 MgSO4·7H2O
7H2O.Mg.O4S 246.473 g/mol
0.1 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
 Role: Mineral source; Properties: Simple component, Defined component, Inorganic compound
3 Yeast extract 0.02 G_PER_L Role: Nutrient source; Properties: Undefined component
4 NH4Cl
Cl.H4N 53.492 g/mol
0.3 G_PER_L CHEBI:31206
ammonium chloride
 Role: Nitrogen source; Properties: Simple component, Defined component, Inorganic compound
5 Resazurin
C12H7NO4 229.191 g/mol
0.5 G_PER_L CHEBI:8806
Resazurin
 Role: pH dependent redox indicator; Properties: Organic compound, Simple component, Defined component
6 Casamino acids (BD-Difco) 0.1 G_PER_L Properties: Undefined component
7 N2
N2 28.014 g/mol
variable VARIABLE CHEBI:17997
dinitrogen
 Properties: Gas
8 0.25 M Potassium phosphate buffer (pH 7.0) 5.6 G_PER_L Role: Buffer; Properties: Defined component, Solution, Inorganic compound, Complex component
9 FeCl3·6H2O
Cl3Fe.6H2O 270.294 g/mol
0.225 G_PER_L CHEBI:86254
iron trichloride hexahydrate
 Role: Mineral source; Properties: Simple component, Defined component, Inorganic compound
10 Quinic acid 0.095 G_PER_L CHEBI:26493
quinic acid
 Role: Growth factor; Properties: Defined component, Simple component, Organic compound

Solutions

Modified Wolfe's mineral solution (see Medium [M961])

Dose: 5 G_PER_L

Cross-reference to Medium M961

5% L-Cysteine·HCl·H2O solution (pH 7.0)

Dose: 8 G_PER_L

Properties: Defined component, Organic compound, Solution

10 mM Fe quinate solution* (see below)

Dose: 5 G_PER_L

Vitamin solution (see Medium [M961])

Dose: 5 G_PER_L

Cross-reference to Medium M961

Target organisms

No target organisms are recorded.

Provenance

Merged from 1 source record.

TimestampCuratorActionNotes
2026-01-27T06:35:54.299226Z togo-import Imported from TOGO Medium Source: JCM, ID: M1291
2026-01-28T19:48:36.629691Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-02-03T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default concentration for ingredient: N2
2026-03-09T08:05:01.094125+00:00 solution-migrator-v1.0 Migrated solutions from ingredients to solutions array Moved 4 solution(s) from ingredients
2026-03-13T03:09:32.930327Z data-quality-cleanup-v1.0 Data quality fixes Merged 1 duplicate ingredient(s)
2026-03-13T06:19:51.768412Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:007826
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default solution name; Added default solution name; Added default solution name; Added default solution name
2026-03-17T06:30:43.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:10.203114+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "Fundidesulfovibrio Magnetotactcus Medium" to "fundidesulfovibrio_magnetotactcus_medium" for consistent matching
2026-05-16T09:03:35.316182+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=2
2026-06-05T07:41:05.669796+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 6 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T06:57:46.904391+00:00 mgso4-heptahydrate-term-fix-v1.0 Corrected MgSO4·7H2O primary term grounding to heptahydrate Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched.
2026-06-10T07:46:58.862523+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:05:35.780459+00:00 merge_recipes.py MERGED_RECIPES merged 1 source recipe(s) on fingerprint a238e034f260f6fcda4d33f486f2c5b8ebd2117357b5a642be472008e24fb0b6