Overview
- External ontology
- TOGO:M1676 — GYP medium (pH 6)
- Applications
-
- Microbial cultivation
- Synonyms
-
- {'name': 'gyp_medium', 'source': 'TOGO', 'source_id': 'TOGO:M1693', 'original_category': 'bacterial'}
- Notes
- Source: https://togomedium.org/medium/M1676 Original source: NBRC - NBRC_M881-2 Original URL: https://www.nite.go.jp/nbrc/catalogue/NBRCMediumDetailServlet?NO=881
Composition
flowchart LR
CultureMech_008234["gyp_medium_ph_6"]
ing0_Distilled_water["Distilled water"]
CultureMech_008234 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_Sodium_acetate["Sodium acetate"]
CultureMech_008234 --> ing1_Sodium_acetate
CHEBI_32954["CHEBI:32954"]
ing1_Sodium_acetate -.-> CHEBI_32954
ing2_CaCO3["CaCO3"]
CultureMech_008234 --> ing2_CaCO3
CHEBI_3311["CHEBI:3311"]
ing2_CaCO3 -.-> CHEBI_3311
ing3_Glucose["Glucose"]
CultureMech_008234 --> ing3_Glucose
CHEBI_17234["CHEBI:17234"]
ing3_Glucose -.-> CHEBI_17234
ing4_Agar["Agar"]
CultureMech_008234 --> ing4_Agar
CHEBI_2509["CHEBI:2509"]
ing4_Agar -.-> CHEBI_2509
ing5_Bacto_Yeast_Extract__Difco_["Bacto Yeast Extract (Difco)"]
CultureMech_008234 --> ing5_Bacto_Yeast_Extract__Difco_
Ingredients (6)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
1 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component |
| 2 |
Sodium acetate
C2H3O2.Na 82.034 g/mol
|
2 G_PER_L |
CHEBI:32954
sodium acetate
|
Role: Buffer; Properties: Defined component, Organic compound, Simple component |
| 3 |
CaCO3
CO3.Ca 100.086 g/mol
|
5 G_PER_L |
CHEBI:3311
calcium carbonate
|
Role: Mineral source, Protective agent; Properties: Defined component, Simple component, Inorganic compound |
| 4 |
Glucose
C6H12O6 180.156 g/mol
|
10 G_PER_L |
CHEBI:17234
glucose
|
Role: Carbon source; Properties: Organic compound, Simple component, Defined component |
| 5 | Agar | 15 G_PER_L |
CHEBI:2509
agar
|
Role: Solidifying component |
| 6 | Bacto Yeast Extract (Difco) | 10 G_PER_L | Properties: Undefined component |
Solutions
Hipolypepton*
Dose: 5 G_PER_L
Properties: Undefined component
**Tween 80 solution (see Medium [M1675])
Dose: 10 G_PER_L
Cross-reference to Medium M1675
***Salts solution (see Medium [M1675])
Dose: 5 G_PER_L
Cross-reference to Medium M1675
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- TOGO_M1676_GYP_medium_pH_6 (CultureMech:008234)
- TOGO_M1693_GYP_medium (CultureMech:008253)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:58.120835Z | togo-import | Imported from TOGO Medium | Source: NBRC, ID: M1676 |
| 2026-01-28T19:48:23.004773Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-09T08:04:38.219523+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 3 solution(s) from ingredients |
| 2026-03-13T06:19:54.763099Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:008234 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name; Added default solution name; Added default solution name |
| 2026-03-17T06:30:14.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:13.376665+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "GYP medium (pH 6)" to "gyp_medium_ph_6" for consistent matching |
| 2026-05-16T09:03:10.796207+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-06-05T07:40:33.902898+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 5 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-08-06T03:05:09.275579+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: TOGO_M1676_GYP_medium_pH_6, TOGO_M1693_GYP_medium |
| 2026-08-06T03:05:09.275613+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint 6eebe7c353e68fcf9c91f55219fce2eeb6c89f8193aebb37d2db3996894a657d |