Overview
- External ontology
- TOGO:M2024 — NAV medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M2024 Original source: NBRC - NBRC_M1315 Original URL: https://www.nite.go.jp/nbrc/catalogue/NBRCMediumDetailServlet?NO=1315
Composition
flowchart LR
CultureMech_008612["nav_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_008612 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_NaCl["NaCl"]
CultureMech_008612 --> ing1_NaCl
CHEBI_26710["CHEBI:26710"]
ing1_NaCl -.-> CHEBI_26710
ing2_Agar__if_needed_["Agar (if needed)"]
CultureMech_008612 --> ing2_Agar__if_needed_
ing3_Beef_extract["Beef extract"]
CultureMech_008612 --> ing3_Beef_extract
ing4_Peptone["Peptone"]
CultureMech_008612 --> ing4_Peptone
ing5_Biotin["Biotin"]
CultureMech_008612 --> ing5_Biotin
CHEBI_15956["CHEBI:15956"]
ing5_Biotin -.-> CHEBI_15956
ing6_p_Aminobenzoic_acid["p-Aminobenzoic acid"]
CultureMech_008612 --> ing6_p_Aminobenzoic_acid
CHEBI_30753["CHEBI:30753"]
ing6_p_Aminobenzoic_acid -.-> CHEBI_30753
ing7_Thiamin_HCl["Thiamin-HCl"]
CultureMech_008612 --> ing7_Thiamin_HCl
CHEBI_49105["CHEBI:49105"]
ing7_Thiamin_HCl -.-> CHEBI_49105
ing8_Ca_pantothenate["Ca-pantothenate"]
CultureMech_008612 --> ing8_Ca_pantothenate
CHEBI_29032["CHEBI:29032"]
ing8_Ca_pantothenate -.-> CHEBI_29032
ing9_Pyridoxine_HCl["Pyridoxine-HCl"]
CultureMech_008612 --> ing9_Pyridoxine_HCl
CHEBI_30961["CHEBI:30961"]
ing9_Pyridoxine_HCl -.-> CHEBI_30961
ing10_Cyanocobalamin["Cyanocobalamin"]
CultureMech_008612 --> ing10_Cyanocobalamin
CHEBI_17439["CHEBI:17439"]
ing10_Cyanocobalamin -.-> CHEBI_17439
ing11_Niacin["Niacin"]
CultureMech_008612 --> ing11_Niacin
CHEBI_15940["CHEBI:15940"]
ing11_Niacin -.-> CHEBI_15940
ing12_Inositol["Inositol"]
CultureMech_008612 --> ing12_Inositol
CHEBI_24848["CHEBI:24848"]
ing12_Inositol -.-> CHEBI_24848
Ingredients (13)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
2.0 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Simple component, Inorganic compound, Defined component [Merged 2 duplicates: 1.0, 1.0] |
| 2 |
NaCl
Cl.Na 58.443 g/mol
|
5 G_PER_L |
CHEBI:26710
sodium chloride
|
Role: Mineral source; Properties: Simple component, Inorganic compound, Defined component |
| 3 | Agar (if needed) | 15 G_PER_L | Role: Solidifying component | |
| 4 | Beef extract | 5 G_PER_L | Properties: Undefined component | |
| 5 | Peptone | 10 G_PER_L | ||
| 6 |
Biotin
C10H16N2O3S 244.316 g/mol
|
2 G_PER_L |
CHEBI:15956
biotin
|
Role: Vitamin; Properties: Organic compound, Defined component, Simple component |
| 7 |
p-Aminobenzoic acid
C7H7NO2 137.138 g/mol
|
200 G_PER_L |
CHEBI:30753
4-aminobenzoic acid
|
Role: Vitamin; Properties: Defined component, Organic compound, Simple component |
| 8 |
Thiamin-HCl
C12H17N4OS.Cl.HCl 337.276 g/mol
|
400 G_PER_L |
CHEBI:49105
thiamine hydrochloride
|
Role: Vitamin; Properties: Defined component, Organic compound, Simple component |
| 9 |
Ca-pantothenate
C9H16NO5 218.229 g/mol
|
400 G_PER_L |
CHEBI:29032
(R)-pantothenate
|
Role: Vitamin; Properties: Simple component, Organic compound, Defined component |
| 10 |
Pyridoxine-HCl
C8H11NO3.HCl 205.641 g/mol
|
400 G_PER_L |
CHEBI:30961
pyridoxine hydrochloride
|
Role: Vitamin; Properties: Simple component, Organic compound, Defined component |
| 11 |
Cyanocobalamin
C63H88CoN14O14P 1355.388 g/mol
|
500 G_PER_L |
CHEBI:17439
cyanocob(III)alamin
|
Role: Vitamin; Properties: Organic compound, Simple component, Defined component |
| 12 |
Niacin
C6H5NO2 123.111 g/mol
|
400 G_PER_L |
CHEBI:15940
nicotinic acid
|
Role: Vitamin; Properties: Defined component, Organic compound, Simple component |
| 13 |
Inositol
C6H12O6 180.156 g/mol
|
200 G_PER_L |
CHEBI:24848
inositol
|
Role: Growth factor; Properties: Organic compound, Simple component, Defined component |
Solutions
Vitamin mixture*
Dose: 1 G_PER_L
See mediadive_5209_Vitamin_mixture.yaml for composition
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- nav_medium (CultureMech:008612)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:58.897648Z | togo-import | Imported from TOGO Medium | Source: NBRC, ID: M2024 |
| 2026-01-28T19:48:21.082273Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-09T08:04:34.938492+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 1 solution(s) from ingredients |
| 2026-03-13T03:09:04.500492Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 1 duplicate ingredient(s) |
| 2026-03-13T06:19:58.651547Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:008612 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name |
| 2026-03-17T06:30:10.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:17.273636+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "NAV medium" to "nav_medium" for consistent matching |
| 2026-05-16T09:04:27.475341+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-06-05T07:41:39.502676+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 10 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-08T23:19:49.370940+00:00 | chebi-regrounding-v1.0 | Corrected CHEBI ingredient grounding (audit G21/G22) | Re-grounded 2 term reference(s) to the correct CHEBI (see reports/chebi_grounding_audit.md). Label-conditional fixes for pyridoxine/pyridoxamine, glycerol, MnSO4, Ca(NO3)2, selenate; casamino acids de-grounded (mixture, no single CHEBI). |
| 2026-08-06T03:05:51.202274+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint 4c861a52041fb2e8f4d3083bd0dd071a41c349139215c8a08e1c2c6287f13b89 |