archaeoglobus_profundus_medium

CultureMech:008669 archaea COMPLEX LIQUID
Original name: Archaeoglobus Profundus Medium

Overview

External ontology
TOGO:M207 — Archaeoglobus Profundus Medium
Applications
  • Microbial cultivation
Notes
Source: https://togomedium.org/medium/M207 Original source: JCM - JCM_M214 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=214

Composition

flowchart LR
    CultureMech_008669["archaeoglobus_profundus_medium"]
    ing0_Distilled_water["Distilled water"]
    CultureMech_008669 --> ing0_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing0_Distilled_water -.-> CHEBI_15377
    ing1_MgSO4_7H2O["MgSO4・7H2O"]
    CultureMech_008669 --> ing1_MgSO4_7H2O
    CHEBI_31795["CHEBI:31795"]
    ing1_MgSO4_7H2O -.-> CHEBI_31795
    ing2_NaCl["NaCl"]
    CultureMech_008669 --> ing2_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing2_NaCl -.-> CHEBI_26710
    ing3_CaCl2_2H2O["CaCl2・2H2O"]
    CultureMech_008669 --> ing3_CaCl2_2H2O
    CHEBI_86158["CHEBI:86158"]
    ing3_CaCl2_2H2O -.-> CHEBI_86158
    ing4_NH4Cl["NH4Cl"]
    CultureMech_008669 --> ing4_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing4_NH4Cl -.-> CHEBI_31206
    ing5_K2HPO4["K2HPO4"]
    CultureMech_008669 --> ing5_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing5_K2HPO4 -.-> CHEBI_131527
    ing6_Resazurin["Resazurin"]
    CultureMech_008669 --> ing6_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing6_Resazurin -.-> CHEBI_8806
    ing7_MgCl2_6H2O["MgCl2・6H2O"]
    CultureMech_008669 --> ing7_MgCl2_6H2O
    CHEBI_86345["CHEBI:86345"]
    ing7_MgCl2_6H2O -.-> CHEBI_86345
    ing8_Na2S_9H2O["Na2S・9H2O"]
    CultureMech_008669 --> ing8_Na2S_9H2O
    CHEBI_76209["CHEBI:76209"]
    ing8_Na2S_9H2O -.-> CHEBI_76209
    ing9_KCl["KCl"]
    CultureMech_008669 --> ing9_KCl
    CHEBI_32588["CHEBI:32588"]
    ing9_KCl -.-> CHEBI_32588
    ing10_NaHCO3["NaHCO3"]
    CultureMech_008669 --> ing10_NaHCO3
    CHEBI_32139["CHEBI:32139"]
    ing10_NaHCO3 -.-> CHEBI_32139
    ing11_Sodium_acetate["Sodium acetate"]
    CultureMech_008669 --> ing11_Sodium_acetate
    CHEBI_32954["CHEBI:32954"]
    ing11_Sodium_acetate -.-> CHEBI_32954
    ing12_Na2SO4["Na2SO4"]
    CultureMech_008669 --> ing12_Na2SO4
    CHEBI_32149["CHEBI:32149"]
    ing12_Na2SO4 -.-> CHEBI_32149
    ing13_Fe_NH4_2_SO4_2_6H2O["Fe(NH4)2(SO4)2・6H2O"]
    CultureMech_008669 --> ing13_Fe_NH4_2_SO4_2_6H2O
    CHEBI_76181["CHEBI:76181"]
    ing13_Fe_NH4_2_SO4_2_6H2O -.-> CHEBI_76181
    ing14__NH4_2Ni_SO4_2_6H2O["(NH4)2Ni(SO4)2・6H2O"]
    CultureMech_008669 --> ing14__NH4_2Ni_SO4_2_6H2O
    CHEBI_86149["CHEBI:86149"]
    ing14__NH4_2Ni_SO4_2_6H2O -.-> CHEBI_86149
    ing15_Yeast_extract__BD_Difco_["Yeast extract (BD-Difco)"]
    CultureMech_008669 --> ing15_Yeast_extract__BD_Difco_
    ing16_H2SO4["H2SO4"]
    CultureMech_008669 --> ing16_H2SO4
    CHEBI_26836["CHEBI:26836"]
    ing16_H2SO4 -.-> CHEBI_26836
    ing17_Carbon_dioxide_gas["Carbon dioxide gas"]
    CultureMech_008669 --> ing17_Carbon_dioxide_gas
    CHEBI_16526["CHEBI:16526"]
    ing17_Carbon_dioxide_gas -.-> CHEBI_16526
    ing18_N2["N2"]
    CultureMech_008669 --> ing18_N2
    CHEBI_17997["CHEBI:17997"]
    ing18_N2 -.-> CHEBI_17997
    ing19_Hydrogen_gas["Hydrogen gas"]
    CultureMech_008669 --> ing19_Hydrogen_gas
    CHEBI_18276["CHEBI:18276"]
    ing19_Hydrogen_gas -.-> CHEBI_18276

Ingredients (20)

# Ingredient Concentration Ontology Notes
1 Distilled water
H2O 18.015 g/mol
990 G_PER_L CHEBI:15377
water
 Role: Solvating media; Properties: Inorganic compound, Defined component, Simple component
2 MgSO4・7H2O
7H2O.Mg.O4S 246.473 g/mol
3.45 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
 Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
3 NaCl
Cl.Na 58.443 g/mol
18 G_PER_L CHEBI:26710
sodium chloride
 Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
4 CaCl2・2H2O
Ca.2Cl.2H2O 147.014 g/mol
0.14 G_PER_L CHEBI:86158
calcium chloride dihydrate
 Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
5 NH4Cl
Cl.H4N 53.492 g/mol
0.25 G_PER_L CHEBI:31206
ammonium chloride
 Role: Nitrogen source; Properties: Inorganic compound, Defined component, Simple component
6 K2HPO4
HO4P.2K 174.174 g/mol
0.14 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
 Role: Buffer; Properties: Inorganic compound, Defined component, Simple component
7 Resazurin
C12H7NO4 229.191 g/mol
1 G_PER_L CHEBI:8806
Resazurin
 Role: pH dependent redox indicator; Properties: Organic compound, Defined component, Simple component
8 MgCl2・6H2O
2Cl.6H2O.Mg 203.301 g/mol
4 G_PER_L CHEBI:86345
magnesium dichloride hexahydrate
 Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
9 Na2S・9H2O
9H2O.2Na.S 240.182 g/mol
0.5 G_PER_L CHEBI:76209
sodium sulfide nonahydrate
 Role: Reducing agent; Properties: Inorganic compound, Defined component, Simple component
10 KCl
Cl.K 74.551 g/mol
0.34 G_PER_L CHEBI:32588
potassium chloride
 Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
11 NaHCO3
CHO3.Na 84.006 g/mol
1 G_PER_L CHEBI:32139
sodium hydrogencarbonate
 Role: Buffer; Properties: Inorganic compound, Defined component, Simple component
12 Sodium acetate
C2H3O2.Na 82.034 g/mol
1 G_PER_L CHEBI:32954
sodium acetate
 Role: Buffer; Properties: Organic compound, Defined component, Simple component
13 Na2SO4
2Na.O4S 142.043 g/mol
2.7 G_PER_L CHEBI:32149
sodium sulfate
 Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
14 Fe(NH4)2(SO4)2・6H2O
Fe.6H2O.2H4N.2O4S 392.139 g/mol
2 G_PER_L CHEBI:76181
ferrous ammonium sulfate hexahydrate
 Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
15 (NH4)2Ni(SO4)2・6H2O
6H2O.2H4N.Ni.2O4S 394.987 g/mol
2 G_PER_L CHEBI:86149
ammonium nickel sulfate hexahydrate
 Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
16 Yeast extract (BD-Difco) 0.5 G_PER_L Properties: Undefined component
17 H2SO4
H2O4S 98.079 g/mol
variable VARIABLE CHEBI:26836
sulfuric acid
 Role: Mineral source; Properties: Defined component, Inorganic compound, Solution
18 Carbon dioxide gas
CO2 44.009 g/mol
variable VARIABLE CHEBI:16526
carbon dioxide
 Properties: ガス
19 N2
N2 28.014 g/mol
variable VARIABLE CHEBI:17997
dinitrogen
 Properties: ガス
20 Hydrogen gas
H2 2.016 g/mol
variable VARIABLE CHEBI:18276
dihydrogen
 Properties: ガス

Solutions

Trace minerals (see Medium [M142])

Dose: 10 G_PER_L

Cross-reference to Medium M142

Target organisms

No target organisms are recorded.

Provenance

Merged from 1 source record.

TimestampCuratorActionNotes
2026-01-27T06:35:54.614217Z togo-import Imported from TOGO Medium Source: JCM, ID: M207
2026-01-28T19:48:21.669752Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-02-03T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default concentration for ingredient: H2SO4; Added default concentration for ingredient: Carbon dioxide gas; Added default concentration for ingredient: N2; Added default concentration for ingredient: Hydrogen gas
2026-03-09T08:04:36.241219+00:00 solution-migrator-v1.0 Migrated solutions from ingredients to solutions array Moved 1 solution(s) from ingredients
2026-03-13T06:19:59.240194Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:008669
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default solution name
2026-03-17T06:30:11.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:17.873128+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "Archaeoglobus Profundus Medium" to "archaeoglobus_profundus_medium" for consistent matching
2026-05-16T09:03:12.263462+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=2
2026-06-05T07:40:35.420519+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 10 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T06:57:25.431938+00:00 mgso4-heptahydrate-term-fix-v1.0 Corrected MgSO4·7H2O primary term grounding to heptahydrate Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched.
2026-06-10T07:46:48.580138+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:04:26.112461+00:00 merge_recipes.py MERGED_RECIPES merged 1 source recipe(s) on fingerprint c5aebcdaecda247c21085f3099b84b4c6a18a4688ac4e54d920450c983833a2e