Overview
- External ontology
- TOGO:M2686 — Acidaminococcus Fermentans Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M2686 Original URL: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium414.pdf
Composition
flowchart LR
CultureMech_009241["acidaminococcus_fermentans_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_009241 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_Yeast_extract["Yeast extract"]
CultureMech_009241 --> ing1_Yeast_extract
ing2_KH2PO4["KH2PO4"]
CultureMech_009241 --> ing2_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing2_KH2PO4 -.-> CHEBI_63036
ing3_Tween_80["Tween 80"]
CultureMech_009241 --> ing3_Tween_80
CHEBI_53426["CHEBI:53426"]
ing3_Tween_80 -.-> CHEBI_53426
ing4_Na_glutamate["Na-glutamate"]
CultureMech_009241 --> ing4_Na_glutamate
CHEBI_64220["CHEBI:64220"]
ing4_Na_glutamate -.-> CHEBI_64220
ing5_Arginine["Arginine"]
CultureMech_009241 --> ing5_Arginine
CHEBI_32696["CHEBI:32696"]
ing5_Arginine -.-> CHEBI_32696
ing6_DL_Tryptophan["DL-Tryptophan"]
CultureMech_009241 --> ing6_DL_Tryptophan
CHEBI_57912["CHEBI:57912"]
ing6_DL_Tryptophan -.-> CHEBI_57912
ing7_Glycine["Glycine"]
CultureMech_009241 --> ing7_Glycine
CHEBI_15428["CHEBI:15428"]
ing7_Glycine -.-> CHEBI_15428
ing8_Glucose["Glucose"]
CultureMech_009241 --> ing8_Glucose
CHEBI_17234["CHEBI:17234"]
ing8_Glucose -.-> CHEBI_17234
ing9_Trypticase_peptone["Trypticase peptone"]
CultureMech_009241 --> ing9_Trypticase_peptone
ing10_Casamino_acids["Casamino acids"]
CultureMech_009241 --> ing10_Casamino_acids
ing11_Cysteine_HCl_x_H2O["Cysteine-HCl x H2O"]
CultureMech_009241 --> ing11_Cysteine_HCl_x_H2O
CHEBI_91248["CHEBI:91248"]
ing11_Cysteine_HCl_x_H2O -.-> CHEBI_91248
Ingredients (12)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
1000 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component |
| 2 | Yeast extract | 5 G_PER_L | Role: Nutrient source; Properties: Undefined component | |
| 3 |
KH2PO4
H2O4P.K 136.084 g/mol
|
2 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
Role: Buffer; Properties: Inorganic compound, Simple component, Defined component |
| 4 |
Tween 80
(C2H4O)w.(C2H4O)x.(C2H4O)y.(C2H4O)z.C24H44O6 604.822 g/mol
|
0.5 G_PER_L |
CHEBI:53426
polysorbate 80
|
Role: Surfactant; Properties: Simple component, Defined component, Organic compound |
| 5 |
Na-glutamate
C5H8NO4.Na 169.112 g/mol
|
4 G_PER_L |
CHEBI:64220
monosodium glutamate
|
Role: Nitrogen source; Properties: Simple component, Organic compound, Defined component |
| 6 |
Arginine
C6H15N4O2 175.212 g/mol
|
1 G_PER_L |
CHEBI:32696
argininium(1+)
|
Role: Nitrogen source; Properties: Simple component, Organic compound, Defined component |
| 7 |
DL-Tryptophan
C11H12N2O2 204.229 g/mol
|
0.1 G_PER_L |
CHEBI:57912
L-tryptophan zwitterion
|
Role: Nitrogen source; Properties: Organic compound, Simple component, Defined component |
| 8 |
Glycine
C2H5NO2 75.067 g/mol
|
1 G_PER_L |
CHEBI:15428
glycine
|
Role: Nitrogen source; Properties: Defined component, Simple component, Organic compound |
| 9 |
Glucose
C6H12O6 180.156 g/mol
|
5 G_PER_L |
CHEBI:17234
glucose
|
Role: Carbon source; Properties: Defined component, Organic compound, Simple component |
| 10 | Trypticase peptone | 5 G_PER_L | Properties: Undefined component | |
| 11 | Casamino acids | 10 G_PER_L | Properties: Undefined component | |
| 12 |
Cysteine-HCl x H2O
C3H7NO2S.H2O.HCl 175.637 g/mol
|
0.5 G_PER_L |
CHEBI:91248
L-cysteine hydrochloride hydrate
|
Properties: Defined component, Simple component, Organic compound |
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- TOGO_M2686_Acidaminococcus_Fermentans_Medium (CultureMech:009241)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:57.062794Z | togo-import | Imported from TOGO Medium | Source: TOGO, ID: M2686 |
| 2026-01-28T19:48:40.373025Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-13T06:20:04.607505Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:009241 |
| 2026-03-17T06:30:51.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:23.354659+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Acidaminococcus Fermentans Medium" to "acidaminococcus_fermentans_medium" for consistent matching |
| 2026-06-05T07:40:38.492857+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 8 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-08T23:19:33.238951+00:00 | chebi-regrounding-v1.0 | Corrected CHEBI ingredient grounding (audit G21/G22) | Re-grounded 2 term reference(s) to the correct CHEBI (see reports/chebi_grounding_audit.md). Label-conditional fixes for pyridoxine/pyridoxamine, glycerol, MnSO4, Ca(NO3)2, selenate; casamino acids de-grounded (mixture, no single CHEBI). |
| 2026-06-10T07:46:49.644062+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:13.010928+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint d515a0ab1ce58ada21c600900026eaa230cd34adf52f58600dd51d935fc7e710 |