km2_cell_free_medium

CultureMech:009462 bacterial COMPLEX LIQUID
Original name: KM2 cell-free medium

Overview

External ontology
TOGO:M2927 — KM2 cell-free medium
Applications
  • Microbial cultivation
High-metal flag
True
Notes
Source: https://togomedium.org/medium/M2927 Commercial Product: Brain Heart Infusion Supplier: Difco/BD Catalog: 237500 Source: https://microbenotes.com/brain-heart-infusion-bhi-agar/ Accessed: 2026-03-28 Constituent composition researched from product specification.

Composition

flowchart LR
    CultureMech_009462["km2_cell_free_medium"]
    ing0_Distilled_water["Distilled water"]
    CultureMech_009462 --> ing0_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing0_Distilled_water -.-> CHEBI_15377
    ing1_Calf_brains["Calf brains"]
    CultureMech_009462 --> ing1_Calf_brains
    ing2_Beef_heart["Beef heart"]
    CultureMech_009462 --> ing2_Beef_heart
    ing3_Proteose_peptone["Proteose peptone"]
    CultureMech_009462 --> ing3_Proteose_peptone
    ing4_Dextrose["Dextrose"]
    CultureMech_009462 --> ing4_Dextrose
    CHEBI_17634["CHEBI:17634"]
    ing4_Dextrose -.-> CHEBI_17634
    ing5_Sodium_chloride["Sodium chloride"]
    CultureMech_009462 --> ing5_Sodium_chloride
    CHEBI_26710["CHEBI:26710"]
    ing5_Sodium_chloride -.-> CHEBI_26710
    ing6_Disodium_phosphate["Disodium phosphate"]
    CultureMech_009462 --> ing6_Disodium_phosphate
    CHEBI_34683["CHEBI:34683"]
    ing6_Disodium_phosphate -.-> CHEBI_34683
    ing7_PPLO__Difco_["PPLO (Difco)"]
    CultureMech_009462 --> ing7_PPLO__Difco_
    ing8_Pig_serum__Invitrogen_["Pig serum (Invitrogen)"]
    CultureMech_009462 --> ing8_Pig_serum__Invitrogen_
    ing9_Horse_serum__Invitrogen_["Horse serum (Invitrogen)"]
    CultureMech_009462 --> ing9_Horse_serum__Invitrogen_
    ing10_100_mg_ml_azlocillin["100 mg/ml azlocillin"]
    CultureMech_009462 --> ing10_100_mg_ml_azlocillin
    ing11_100_mg_ml_flucloxacillin["100 mg/ml flucloxacillin"]
    CultureMech_009462 --> ing11_100_mg_ml_flucloxacillin
    ing12_1_0_M_NaOH["1.0 M NaOH"]
    CultureMech_009462 --> ing12_1_0_M_NaOH
    ing13_MgSO4_7H2O["MgSO4·7H2O"]
    CultureMech_009462 --> ing13_MgSO4_7H2O
    CHEBI_31795["CHEBI:31795"]
    ing13_MgSO4_7H2O -.-> CHEBI_31795
    ing14_NaCl["NaCl"]
    CultureMech_009462 --> ing14_NaCl
    ing14_NaCl -.-> CHEBI_26710
    ing15_CaCl2_2H2O["CaCl2·2H2O"]
    CultureMech_009462 --> ing15_CaCl2_2H2O
    CHEBI_86158["CHEBI:86158"]
    ing15_CaCl2_2H2O -.-> CHEBI_86158
    ing16_MgCl2_6H2O["MgCl2·6H2O"]
    CultureMech_009462 --> ing16_MgCl2_6H2O
    CHEBI_86345["CHEBI:86345"]
    ing16_MgCl2_6H2O -.-> CHEBI_86345
    ing17_KCl["KCl"]
    CultureMech_009462 --> ing17_KCl
    CHEBI_32588["CHEBI:32588"]
    ing17_KCl -.-> CHEBI_32588
    ing18_KH2PO4["KH2PO4"]
    CultureMech_009462 --> ing18_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing18_KH2PO4 -.-> CHEBI_63036
    ing19_Na2HPO4_12H2O["Na2HPO4·12H2O"]
    CultureMech_009462 --> ing19_Na2HPO4_12H2O
    ing19_Na2HPO4_12H2O -.-> CHEBI_34683
    ing20_0_1_M_NaOH["0.1 M NaOH"]
    CultureMech_009462 --> ing20_0_1_M_NaOH
    ing21_Phenol_red["Phenol red"]
    CultureMech_009462 --> ing21_Phenol_red
    CHEBI_31991["CHEBI:31991"]
    ing21_Phenol_red -.-> CHEBI_31991
    ing22_azlocillin["azlocillin"]
    CultureMech_009462 --> ing22_azlocillin
    ing23_flucloxacillin["flucloxacillin"]
    CultureMech_009462 --> ing23_flucloxacillin

Ingredients (24)

# Ingredient Concentration Ontology Notes
1 Distilled water
H2O 18.015 g/mol
369.0 G_PER_L CHEBI:15377
water
Role: Solvating media; Properties: Inorganic compound, Defined component, Simple component [Merged 5 duplicates: 365.0, 1.0, 1.0, 1.0, 1.0]
2 Calf brains
Difco/BD Brain Heart Infusion 237500
variable VARIABLE UBERON:0000955
brain
infusion from 200 g/L; Tissue infusion - source material is calf brain tissue; Constituent of Brain Heart Infusion commercial product
3 Beef heart
Difco/BD Brain Heart Infusion 237500
variable VARIABLE UBERON:0000948
heart
infusion from 250 g/L; Tissue infusion - source material is beef/ox heart tissue; Constituent of Brain Heart Infusion commercial product
4 Proteose peptone
Difco/BD Brain Heart Infusion 237500
10.0 G_PER_L MICRO:0000180 (source link unavailable)
proteose peptone
Enzymatic digest of animal protein providing amino acids and peptides; Constituent of Brain Heart Infusion commercial product
5 Dextrose
C6H12O6 180.156 g/mol
Difco/BD Brain Heart Infusion 237500
2.0 G_PER_L CHEBI:17634
D-glucose
Carbon/energy source; Constituent of Brain Heart Infusion commercial product
6 Sodium chloride
Cl.Na 58.443 g/mol
Difco/BD Brain Heart Infusion 237500
5.0 G_PER_L CHEBI:26710
sodium chloride
Maintains osmotic equilibrium; Constituent of Brain Heart Infusion commercial product
7 Disodium phosphate
HO4P.2Na 141.958 g/mol
Difco/BD Brain Heart Infusion 237500
2.5 G_PER_L CHEBI:34683
disodium hydrogenphosphate
pH buffer (final pH 7.4 ± 0.2); Constituent of Brain Heart Infusion commercial product
8 PPLO (Difco) 1.6 G_PER_L Properties: Complex component, Undefined component
9 Pig serum (Invitrogen) 50 G_PER_L Role: Nutrient source; Properties: Undefined component
10 Horse serum (Invitrogen) 50 G_PER_L Role: Nutrient source; Properties: Undefined component
11 100 mg/ml azlocillin 25 G_PER_L
12 100 mg/ml flucloxacillin 25 G_PER_L
13 1.0 M NaOH variable VARIABLE Properties: Defined component, Inorganic compound, Solution
14 MgSO4·7H2O
7H2O.Mg.O4S 246.473 g/mol
2 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
15 NaCl
Cl.Na 58.443 g/mol
160 G_PER_L CHEBI:26710
sodium chloride
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
16 CaCl2·2H2O
Ca.2Cl.2H2O 147.014 g/mol
3.7 G_PER_L CHEBI:86158
calcium chloride dihydrate
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
17 MgCl2·6H2O
2Cl.6H2O.Mg 203.301 g/mol
2 G_PER_L CHEBI:86345
magnesium dichloride hexahydrate
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
18 KCl
Cl.K 74.551 g/mol
4 G_PER_L CHEBI:32588
potassium chloride
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
19 KH2PO4
H2O4P.K 136.084 g/mol
1.2 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
Role: Buffer; Properties: Inorganic compound, Defined component, Simple component
20 Na2HPO4·12H2O
HO4P.2Na 141.958 g/mol
3 G_PER_L CHEBI:34683
disodium hydrogenphosphate
Role: Buffer; Properties: Inorganic compound, Defined component, Simple component
21 0.1 M NaOH 10 G_PER_L Properties: Defined component, Inorganic compound, Solution
22 Phenol red
C19H14O5S 354.383 g/mol
0.6 PERCENT_W_V CHEBI:31991
phenol red
Role: pH indicator; Properties: Organic compound, Defined component, Simple component
23 azlocillin 100 G_PER_L Role: Antimicrobial agent; Properties: Defined component, Simple component
24 flucloxacillin 100 G_PER_L Role: Antimicrobial agent; Properties: Defined component, Simple component

Solutions

Fresh baker's yeast extract solution

Dose: 18 G_PER_L

Properties: Undefined component

Sterile solution A

Dose: 12.5 G_PER_L

Sterile solution B

Dose: 12.5 G_PER_L

Phenol red solution

Dose: 1 G_PER_L

Target organisms

No target organisms are recorded.

Provenance

Merged from 1 source record.

TimestampCuratorActionNotes
2026-01-27T06:35:57.409448Z togo-import Imported from TOGO Medium Source: TOGO, ID: M2927
2026-01-28T19:48:06.700980Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-02-03T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default concentration for ingredient: 1.0 M NaOH
2026-03-09T08:03:32.269635+00:00 solution-migrator-v1.0 Migrated solutions from ingredients to solutions array Moved 4 solution(s) from ingredients
2026-03-13T03:08:37.355561Z data-quality-cleanup-v1.0 Data quality fixes Merged 4 duplicate ingredient(s)
2026-03-13T06:20:06.273741Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:009462
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default solution name; Added default solution name; Added default solution name; Added default solution name
2026-03-17T06:29:38.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:25.249212+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "KM2 cell-free medium" to "km2_cell_free_medium" for consistent matching
2026-05-16T09:03:38.505601+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=2
2026-06-05T07:41:10.423110+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 9 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T06:57:50.095644+00:00 mgso4-heptahydrate-term-fix-v1.0 Corrected MgSO4·7H2O primary term grounding to heptahydrate Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched.
2026-06-10T07:47:00.374389+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:05:39.634226+00:00 merge_recipes.py MERGED_RECIPES merged 1 source recipe(s) on fingerprint 71ca657885f11099b7945709d60542f33e365eac1cddc9108d730ad8de5de71a