Overview
- External ontology
- TOGO:M3121 — Modified SME medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M3121
Composition
flowchart LR
CultureMech_009593["modified_sme_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_009593 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_MgSO4_7H2O["MgSO4.7H2O"]
CultureMech_009593 --> ing1_MgSO4_7H2O
CHEBI_31795["CHEBI:31795"]
ing1_MgSO4_7H2O -.-> CHEBI_31795
ing2_NaCl["NaCl"]
CultureMech_009593 --> ing2_NaCl
CHEBI_26710["CHEBI:26710"]
ing2_NaCl -.-> CHEBI_26710
ing3_CaCl2_2H2O["CaCl2.2H2O"]
CultureMech_009593 --> ing3_CaCl2_2H2O
CHEBI_86158["CHEBI:86158"]
ing3_CaCl2_2H2O -.-> CHEBI_86158
ing4_KH2PO4["KH2PO4"]
CultureMech_009593 --> ing4_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing4_KH2PO4 -.-> CHEBI_63036
ing5_Resazurin["Resazurin"]
CultureMech_009593 --> ing5_Resazurin
CHEBI_8806["CHEBI:8806"]
ing5_Resazurin -.-> CHEBI_8806
ing6_MgCl2_6H2O["MgCl2.6H2O"]
CultureMech_009593 --> ing6_MgCl2_6H2O
CHEBI_86345["CHEBI:86345"]
ing6_MgCl2_6H2O -.-> CHEBI_86345
ing7_H3BO3["H3BO3"]
CultureMech_009593 --> ing7_H3BO3
CHEBI_33118["CHEBI:33118"]
ing7_H3BO3 -.-> CHEBI_33118
ing8_KCl["KCl"]
CultureMech_009593 --> ing8_KCl
CHEBI_32588["CHEBI:32588"]
ing8_KCl -.-> CHEBI_32588
ing9_NiCl2_6H2O["NiCl2.6H2O"]
CultureMech_009593 --> ing9_NiCl2_6H2O
CHEBI_34887["CHEBI:34887"]
ing9_NiCl2_6H2O -.-> CHEBI_34887
ing10__NH4_2SO4["(NH4)2SO4"]
CultureMech_009593 --> ing10__NH4_2SO4
CHEBI_62946["CHEBI:62946"]
ing10__NH4_2SO4 -.-> CHEBI_62946
ing11_KNO3["KNO3"]
CultureMech_009593 --> ing11_KNO3
CHEBI_63043["CHEBI:63043"]
ing11_KNO3 -.-> CHEBI_63043
ing12_Na2WO2_2H2O["Na2WO2.2H2O"]
CultureMech_009593 --> ing12_Na2WO2_2H2O
ing13_NaBr["NaBr"]
CultureMech_009593 --> ing13_NaBr
CHEBI_63004["CHEBI:63004"]
ing13_NaBr -.-> CHEBI_63004
ing14_SrCl2_6H2O["SrCl2.6H2O"]
CultureMech_009593 --> ing14_SrCl2_6H2O
CHEBI_36385["CHEBI:36385"]
ing14_SrCl2_6H2O -.-> CHEBI_36385
ing15_KI["KI"]
CultureMech_009593 --> ing15_KI
CHEBI_8346["CHEBI:8346"]
ing15_KI -.-> CHEBI_8346
ing16_Carbon_dioxide_gas["Carbon dioxide gas"]
CultureMech_009593 --> ing16_Carbon_dioxide_gas
CHEBI_16526["CHEBI:16526"]
ing16_Carbon_dioxide_gas -.-> CHEBI_16526
ing17_Hydrogen_gas["Hydrogen gas"]
CultureMech_009593 --> ing17_Hydrogen_gas
CHEBI_18276["CHEBI:18276"]
ing17_Hydrogen_gas -.-> CHEBI_18276
ing18_Na2MoO4_2H2O["Na2MoO4.2H2O"]
CultureMech_009593 --> ing18_Na2MoO4_2H2O
CHEBI_75213["CHEBI:75213"]
ing18_Na2MoO4_2H2O -.-> CHEBI_75213
ing19_FeSO4_7H2O["FeSO4.7H2O"]
CultureMech_009593 --> ing19_FeSO4_7H2O
CHEBI_75836["CHEBI:75836"]
ing19_FeSO4_7H2O -.-> CHEBI_75836
ing20_CuSO4_5H2O["CuSO4.5H2O"]
CultureMech_009593 --> ing20_CuSO4_5H2O
CHEBI_31440["CHEBI:31440"]
ing20_CuSO4_5H2O -.-> CHEBI_31440
ing21_Nitrilotriacetic_acid["Nitrilotriacetic acid"]
CultureMech_009593 --> ing21_Nitrilotriacetic_acid
CHEBI_44557["CHEBI:44557"]
ing21_Nitrilotriacetic_acid -.-> CHEBI_44557
ing22_MnSO4_2H2O["MnSO4.2H2O"]
CultureMech_009593 --> ing22_MnSO4_2H2O
CHEBI_86356["CHEBI:86356"]
ing22_MnSO4_2H2O -.-> CHEBI_86356
ing23_AIK_SO4_2["AIK(SO4)2"]
CultureMech_009593 --> ing23_AIK_SO4_2
ing24_ZnSO4["ZnSO4"]
CultureMech_009593 --> ing24_ZnSO4
CHEBI_35176["CHEBI:35176"]
ing24_ZnSO4 -.-> CHEBI_35176
ing25_CoSO4["CoSO4"]
CultureMech_009593 --> ing25_CoSO4
CHEBI_53470["CHEBI:53470"]
ing25_CoSO4 -.-> CHEBI_53470
Ingredients (26)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
2.0 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Inorganic compound, Defined component, Simple component [Merged 2 duplicates: 1.0, 1.0] |
| 2 |
MgSO4.7H2O
7H2O.Mg.O4S 246.473 g/mol
|
6.5 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component [Merged 2 duplicates: 3.5, 3.0] |
| 3 |
NaCl
Cl.Na 58.443 g/mol
|
21.0 G_PER_L |
CHEBI:26710
sodium chloride
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component [Merged 2 duplicates: 20.0, 1.0] |
| 4 |
CaCl2.2H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.85 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component [Merged 2 duplicates: 0.75, 0.1] |
| 5 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.5 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
Role: Buffer; Properties: Inorganic compound, Defined component, Simple component |
| 6 |
Resazurin
C12H7NO4 229.191 g/mol
|
1 G_PER_L |
CHEBI:8806
Resazurin
|
Role: pH dependent redox indicator; Properties: Organic compound, Defined component, Simple component |
| 7 |
MgCl2.6H2O
2Cl.6H2O.Mg 203.301 g/mol
|
2.75 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 8 |
H3BO3
H3BO3 61.833 g/mol
|
15.01 G_PER_L |
CHEBI:33118
boric acid
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component [Merged 2 duplicates: 15.0, 0.01] |
| 9 |
KCl
Cl.K 74.551 g/mol
|
0.325 G_PER_L |
CHEBI:32588
potassium chloride
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 10 |
NiCl2.6H2O
Cl2Ni 129.599 g/mol
|
2 G_PER_L |
CHEBI:34887
nickel dichloride
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 11 |
(NH4)2SO4
2H4N.O4S 132.141 g/mol
|
10 G_PER_L |
CHEBI:62946
ammonium sulfate
|
Role: Nitrogen source; Properties: Inorganic compound, Defined component, Simple component |
| 12 |
KNO3
K.NO3 101.102 g/mol
|
1 G_PER_L |
CHEBI:63043
potassium nitrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 13 | Na2WO2.2H2O | 0.1 G_PER_L | Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component | |
| 14 |
NaBr
Br.Na 102.894 g/mol
|
50 G_PER_L |
CHEBI:63004
sodium bromide
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 15 |
SrCl2.6H2O
Cl2Sr.6H2O 266.616 g/mol
|
7.5 G_PER_L |
CHEBI:36385
strontium dichloride hexahydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 16 |
KI
I.K 166.002 g/mol
|
0.05 G_PER_L |
CHEBI:8346
potassium iodide
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 17 |
Carbon dioxide gas
CO2 44.009 g/mol
|
variable VARIABLE |
CHEBI:16526
carbon dioxide
|
Properties: ガス |
| 18 |
Hydrogen gas
H2 2.016 g/mol
|
variable VARIABLE |
CHEBI:18276
dihydrogen
|
Properties: ガス |
| 19 |
Na2MoO4.2H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.01 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 20 |
FeSO4.7H2O
Fe.7H2O.O4S 278.013 g/mol
|
0.1 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 21 |
CuSO4.5H2O
Cu.5H2O.O4S 249.684 g/mol
|
0.01 G_PER_L |
CHEBI:31440
copper(II) sulfate pentahydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 22 |
Nitrilotriacetic acid
C6H9NO6 191.139 g/mol
|
1.5 G_PER_L |
CHEBI:44557
nitrilotriacetic acid
|
Role: Mineral source; Properties: Organic compound, Defined component, Simple component |
| 23 |
MnSO4.2H2O
2H2O.Mn.O4S 187.031 g/mol
|
0.5 G_PER_L |
CHEBI:86356
manganese(II) sulfate dihydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 24 | AIK(SO4)2 | 0.01 G_PER_L | Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component | |
| 25 |
ZnSO4
O4S.Zn 161.453 g/mol
|
0.1 G_PER_L |
CHEBI:35176
zinc sulfate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 26 |
CoSO4
Co.O4S 154.996 g/mol
|
0.1 G_PER_L |
CHEBI:53470
cobalt(2+) sulfate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
Solutions
Ttrace element solution
Dose: 10 G_PER_L
KOH solution
Dose: variable VARIABLE
Role: Mineral source; Properties: Defined component, Solution
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- TOGO_M3121_Modified_SME_medium (CultureMech:009593)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:57.461980Z | togo-import | Imported from TOGO Medium | Source: TOGO, ID: M3121 |
| 2026-01-28T19:48:39.622869Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: Carbon dioxide gas; Added default concentration for ingredient: Hydrogen gas; Added default concentration for ingredient: KOH solution |
| 2026-03-09T08:05:06.651177+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 2 solution(s) from ingredients |
| 2026-03-13T03:09:38.374002Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 5 duplicate ingredient(s) |
| 2026-03-13T06:20:07.164176Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:009593 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name; Added default solution name |
| 2026-03-17T06:30:50.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:26.189534+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Modified SME medium" to "modified_sme_medium" for consistent matching |
| 2026-05-16T09:03:16.648591+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=2 |
| 2026-06-05T07:40:39.921003+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 18 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:50.131542+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 5 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:14.531518+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint 102420620ab5a78d5a9af4764aa31f251b9cacb665a7397e78d3a0a1760e323c |