Overview
- External ontology
- TOGO:M379 — Glycerol-Soil Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M379 Original source: JCM - JCM_M384 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=384
Composition
flowchart LR
CultureMech_009760["glycerol_soil_medium"]
ing0_Glycerol["Glycerol"]
CultureMech_009760 --> ing0_Glycerol
CHEBI_17754["CHEBI:17754"]
ing0_Glycerol -.-> CHEBI_17754
ing1_Tap_water["Tap water"]
CultureMech_009760 --> ing1_Tap_water
CHEBI_15377["CHEBI:15377"]
ing1_Tap_water -.-> CHEBI_15377
ing2_Agar["Agar"]
CultureMech_009760 --> ing2_Agar
CHEBI_2509["CHEBI:2509"]
ing2_Agar -.-> CHEBI_2509
ing3_Bacto_peptone__BD_Difco_["Bacto peptone (BD-Difco)"]
CultureMech_009760 --> ing3_Bacto_peptone__BD_Difco_
ing4_Beef_extract__BD_Difco_["Beef extract (BD-Difco)"]
CultureMech_009760 --> ing4_Beef_extract__BD_Difco_
ing5_Soil_extract__See_below_["Soil extract (See below)"]
CultureMech_009760 --> ing5_Soil_extract__See_below_
ing6_air__dried_garden_soil["air--dried garden soil"]
CultureMech_009760 --> ing6_air__dried_garden_soil
Ingredients (7)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Glycerol
C3H8O3 92.094 g/mol
|
20 G_PER_L |
CHEBI:17754
glycerol
|
Role: Carbon source; Properties: Defined component, Organic compound, Simple component |
| 2 |
Tap water
H2O 18.015 g/mol
|
1810.0 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Undefined component [Merged 2 duplicates: 850.0, 960.0] |
| 3 | Agar | 15 G_PER_L |
CHEBI:2509
agar
|
Role: Solidifying component |
| 4 | Bacto peptone (BD-Difco) | 5 G_PER_L | Properties: Undefined component | |
| 5 | Beef extract (BD-Difco) | 3 G_PER_L | Properties: Undefined component | |
| 6 | Soil extract (See below) | 150 G_PER_L | ||
| 7 | air--dried garden soil | 400 G_PER_L | Role: Growth factor; Properties: Undefined component |
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- TOGO_M379_Glycerol-Soil_Medium (CultureMech:009760)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:54.947617Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M379 |
| 2026-01-28T19:48:34.878401Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-13T03:09:29.549828Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 1 duplicate ingredient(s) |
| 2026-03-13T06:20:08.673872Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:009760 |
| 2026-03-17T06:30:39.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:27.668445+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Glycerol-Soil Medium" to "glycerol_soil_medium" for consistent matching |
| 2026-06-05T07:40:40.892161+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-08T23:19:34.177911+00:00 | chebi-regrounding-v1.0 | Corrected CHEBI ingredient grounding (audit G21/G22) | Re-grounded 2 term reference(s) to the correct CHEBI (see reports/chebi_grounding_audit.md). Label-conditional fixes for pyridoxine/pyridoxamine, glycerol, MnSO4, Ca(NO3)2, selenate; casamino acids de-grounded (mixture, no single CHEBI). |
| 2026-08-06T03:05:15.513926+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint 9b7ad2f49ea75234cc43f1c16d47414b2fd8a12db09ef515b150bda820fa33b4 |