Overview
- External ontology
- TOGO:M748 — Ravot Modified Medium For Thermoanaerovibrio SP. R101
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M748 Original source: JCM - JCM_M725 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=725
Composition
flowchart LR
CultureMech_010153["ravot_modified_medium_for_thermoanaerovibrio_sp_r101"]
ing0_Distilled_water["Distilled water"]
CultureMech_010153 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_Yeast_extract["Yeast extract"]
CultureMech_010153 --> ing1_Yeast_extract
ing2_CaCl2_2H2O["CaCl2・2H2O"]
CultureMech_010153 --> ing2_CaCl2_2H2O
CHEBI_86158["CHEBI:86158"]
ing2_CaCl2_2H2O -.-> CHEBI_86158
ing3_NH4Cl["NH4Cl"]
CultureMech_010153 --> ing3_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing3_NH4Cl -.-> CHEBI_31206
ing4_Resazurin["Resazurin"]
CultureMech_010153 --> ing4_Resazurin
CHEBI_8806["CHEBI:8806"]
ing4_Resazurin -.-> CHEBI_8806
ing5_MgCl2_6H2O["MgCl2・6H2O"]
CultureMech_010153 --> ing5_MgCl2_6H2O
CHEBI_86345["CHEBI:86345"]
ing5_MgCl2_6H2O -.-> CHEBI_86345
ing6_KCl["KCl"]
CultureMech_010153 --> ing6_KCl
CHEBI_32588["CHEBI:32588"]
ing6_KCl -.-> CHEBI_32588
ing7_Sulfur__powder_["Sulfur (powder)"]
CultureMech_010153 --> ing7_Sulfur__powder_
CHEBI_33403["CHEBI:33403"]
ing7_Sulfur__powder_ -.-> CHEBI_33403
ing8_PIPES["PIPES"]
CultureMech_010153 --> ing8_PIPES
CHEBI_39033["CHEBI:39033"]
ing8_PIPES -.-> CHEBI_39033
ing9_Sodium_acetate_3H2O["Sodium acetate・3H2O"]
CultureMech_010153 --> ing9_Sodium_acetate_3H2O
CHEBI_32954["CHEBI:32954"]
ing9_Sodium_acetate_3H2O -.-> CHEBI_32954
ing10_Trypticase_peptone__BD_BBL_["Trypticase peptone (BD-BBL)"]
CultureMech_010153 --> ing10_Trypticase_peptone__BD_BBL_
ing11_N2["N2"]
CultureMech_010153 --> ing11_N2
CHEBI_17997["CHEBI:17997"]
ing11_N2 -.-> CHEBI_17997
Ingredients (12)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
1 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component |
| 2 | Yeast extract | 5 G_PER_L | Role: Nutrient source; Properties: Undefined component | |
| 3 |
CaCl2・2H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.1 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component |
| 4 |
NH4Cl
Cl.H4N 53.492 g/mol
|
1 G_PER_L |
CHEBI:31206
ammonium chloride
|
Role: Nitrogen source; Properties: Simple component, Inorganic compound, Defined component |
| 5 |
Resazurin
C12H7NO4 229.191 g/mol
|
1 G_PER_L |
CHEBI:8806
Resazurin
|
Role: pH dependent redox indicator; Properties: Defined component, Organic compound, Simple component |
| 6 |
MgCl2・6H2O
2Cl.6H2O.Mg 203.301 g/mol
|
0.2 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component |
| 7 |
KCl
Cl.K 74.551 g/mol
|
0.1 G_PER_L |
CHEBI:32588
potassium chloride
|
Role: Mineral source; Properties: Defined component, Simple component, Inorganic compound |
| 8 | Sulfur (powder) | 5 G_PER_L |
CHEBI:33403
elemental sulfur
|
Role: Mineral source; Properties: Defined component, Simple component, Inorganic compound |
| 9 | PIPES | 3.45 G_PER_L |
CHEBI:39033
PIPES
|
Role: Buffer; Properties: Defined component, Simple component, Organic compound |
| 10 |
Sodium acetate・3H2O
C2H3O2.Na 82.034 g/mol
|
0.83 G_PER_L |
CHEBI:32954
sodium acetate
|
Role: Buffer; Properties: Simple component, Organic compound, Defined component |
| 11 | Trypticase peptone (BD-BBL) | 5 G_PER_L | Properties: Undefined component | |
| 12 |
N2
N2 28.014 g/mol
|
variable VARIABLE |
CHEBI:17997
dinitrogen
|
Properties: ガス |
Solutions
7% K2HPO4 solution
Dose: 4.3 G_PER_L
Role: Buffer; Properties: Defined component, Inorganic compound, Solution
7% KH2PO4 solution
Dose: 4.3 G_PER_L
Role: Buffer; Properties: Defined component, Inorganic compound, Solution
3% Na2S・9H2O solution
Dose: 10 G_PER_L
Role: Reducing agent; Properties: Solution, Inorganic compound, Defined component
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- TOGO_M748_Ravot_Modified_Medium_For_Thermoanaerovibrio_SP._R101 (CultureMech:010153)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-06-14T05:58:58.561437+00:00 | idnf-grounding-fix-v1.0 | Fixed ID_NOT_FOUND term groundings | Absent/obsolete CHEBI term ids fixed - 1 re-grounded to the correct CHEBI, 0 de-grounded (mixture or unverifiable). |
| 2026-01-27T06:35:55.641737Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M748 |
| 2026-01-28T19:48:34.563386Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: N2; Added default concentration for ingredient: N2 |
| 2026-03-09T08:04:57.409121+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 3 solution(s) from ingredients |
| 2026-03-13T03:09:28.986133Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 1 duplicate ingredient(s) |
| 2026-03-13T06:20:11.726368Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:010153 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name; Added default solution name; Added default solution name |
| 2026-03-17T06:30:38.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:30.656574+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Ravot Modified Medium For Thermoanaerovibrio SP. R101" to "ravot_modified_medium_for_thermoanaerovibrio_sp_r101" for consistent matching |
| 2026-05-16T09:03:20.559426+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=2 |
| 2026-06-05T07:40:44.091101+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 5 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:51.528502+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:18.933203+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint 8c3a0b8719a89df2f1624cbe00062fe907de454da11785d57de8409f1ad602ae |