Overview
- External ontology
- TOGO:M87 — Rhodopseudomonas Rutila Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M87 Original source: JCM - JCM_M95 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=95
Composition
flowchart LR
CultureMech_010298["rhodopseudomonas_rutila_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_010298 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_MgSO4_7H2O["MgSO4・7H2O"]
CultureMech_010298 --> ing1_MgSO4_7H2O
CHEBI_31795["CHEBI:31795"]
ing1_MgSO4_7H2O -.-> CHEBI_31795
ing2_Yeast_extract["Yeast extract"]
CultureMech_010298 --> ing2_Yeast_extract
ing3_CaCl2_2H2O["CaCl2・2H2O"]
CultureMech_010298 --> ing3_CaCl2_2H2O
CHEBI_86158["CHEBI:86158"]
ing3_CaCl2_2H2O -.-> CHEBI_86158
ing4_KH2PO4["KH2PO4"]
CultureMech_010298 --> ing4_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing4_KH2PO4 -.-> CHEBI_63036
ing5_FeSO4_7H2O["FeSO4・7H2O"]
CultureMech_010298 --> ing5_FeSO4_7H2O
CHEBI_75836["CHEBI:75836"]
ing5_FeSO4_7H2O -.-> CHEBI_75836
ing6_NaHCO3["NaHCO3"]
CultureMech_010298 --> ing6_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing6_NaHCO3 -.-> CHEBI_32139
ing7_CoCl2_6H2O["CoCl2・6H2O"]
CultureMech_010298 --> ing7_CoCl2_6H2O
CHEBI_35696["CHEBI:35696"]
ing7_CoCl2_6H2O -.-> CHEBI_35696
ing8_Biotin["Biotin"]
CultureMech_010298 --> ing8_Biotin
CHEBI_15956["CHEBI:15956"]
ing8_Biotin -.-> CHEBI_15956
ing9_Thiamine_HCl["Thiamine・HCl"]
CultureMech_010298 --> ing9_Thiamine_HCl
CHEBI_49105["CHEBI:49105"]
ing9_Thiamine_HCl -.-> CHEBI_49105
ing10_Nicotinic_acid["Nicotinic acid"]
CultureMech_010298 --> ing10_Nicotinic_acid
CHEBI_15940["CHEBI:15940"]
ing10_Nicotinic_acid -.-> CHEBI_15940
ing11_MnSO4_xH2O["MnSO4・xH2O"]
CultureMech_010298 --> ing11_MnSO4_xH2O
CHEBI_86360["CHEBI:86360"]
ing11_MnSO4_xH2O -.-> CHEBI_86360
ing12_Sodium_glutamate["Sodium glutamate"]
CultureMech_010298 --> ing12_Sodium_glutamate
CHEBI_64220["CHEBI:64220"]
ing12_Sodium_glutamate -.-> CHEBI_64220
ing13_Sodium_L__malate["Sodium L--malate"]
CultureMech_010298 --> ing13_Sodium_L__malate
Ingredients (14)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
1 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Inorganic compound, Simple component, Defined component |
| 2 |
MgSO4・7H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.2 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component |
| 3 | Yeast extract | 2 G_PER_L | Role: Nutrient source; Properties: Undefined component | |
| 4 |
CaCl2・2H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.1 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
Role: Mineral source; Properties: Defined component, Simple component, Inorganic compound |
| 5 |
KH2PO4
H2O4P.K 136.084 g/mol
|
1 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
Role: Buffer; Properties: Defined component, Inorganic compound, Simple component |
| 6 |
FeSO4・7H2O
Fe.7H2O.O4S 278.013 g/mol
|
0.5 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
Role: Mineral source; Properties: Defined component, Simple component, Inorganic compound |
| 7 |
NaHCO3
CHO3.Na 84.006 g/mol
|
0.5 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
Role: Buffer; Properties: Simple component, Inorganic compound, Defined component |
| 8 |
CoCl2・6H2O
2Cl.Co 129.839 g/mol
|
0.5 G_PER_L |
CHEBI:35696
cobalt dichloride
|
Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component |
| 9 |
Biotin
C10H16N2O3S 244.316 g/mol
|
0.01 G_PER_L |
CHEBI:15956
biotin
|
Role: Vitamin; Properties: Defined component, Simple component, Organic compound |
| 10 |
Thiamine・HCl
C12H17N4OS.Cl.HCl 337.276 g/mol
|
1 G_PER_L |
CHEBI:49105
thiamine hydrochloride
|
Role: Vitamin; Properties: Defined component, Simple component, Organic compound |
| 11 |
Nicotinic acid
C6H5NO2 123.111 g/mol
|
1 G_PER_L |
CHEBI:15940
nicotinic acid
|
Role: Vitamin; Properties: Defined component, Organic compound, Simple component |
| 12 |
MnSO4・xH2O
Mn.O4S 151.001 g/mol
|
2 G_PER_L |
CHEBI:86360
manganese(II) sulfate
|
Role: Mineral source; Properties: Defined component, Simple component, Inorganic compound |
| 13 |
Sodium glutamate
C5H8NO4.Na 169.112 g/mol
|
2 G_PER_L |
CHEBI:64220
monosodium glutamate
|
Role: Nitrogen source; Properties: Simple component, Organic compound, Defined component |
| 14 | Sodium L--malate | 2 G_PER_L | Properties: Defined component, Organic compound, Simple component |
Target organisms
No target organisms are recorded.
Provenance
Merged from 1 source record.
- TOGO_M87_Rhodopseudomonas_Rutila_Medium (CultureMech:010298)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:55.870830Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M87 |
| 2026-01-28T19:48:12.386578Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-13T06:20:12.791241Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:010298 |
| 2026-03-17T06:29:51.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:31.738144+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Rhodopseudomonas Rutila Medium" to "rhodopseudomonas_rutila_medium" for consistent matching |
| 2026-06-05T07:40:45.305446+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 6 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T06:57:33.671143+00:00 | mgso4-heptahydrate-term-fix-v1.0 | Corrected MgSO4·7H2O primary term grounding to heptahydrate | Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched. |
| 2026-06-10T07:46:51.919315+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:20.139594+00:00 | merge_recipes.py | MERGED_RECIPES | merged 1 source recipe(s) on fingerprint cc3fb7d0b9322d8d6e481f6ce6484d77329a19db792e1f8e3832a55f60830230 |