Overview
- Notes
- Headspace gas: N2/CO2 (80:20) Vessel type: Anaerobic pressure tubes or serum bottles (10 mL cultures); 160 mL serum bottles with 50 mL medium for larger cultures Modified freshwater medium boiled to reduce oxygen solubility, then cooled under N2/CO2 (80:20) gas mixture. Ethanol (20 mM) and other additives added from anaerobic sterile stocks: 1 mM cysteine and 0.5 mM Na2S·9H2O as reducing agents. Bicarbonate/CO2 serves as sole electron acceptor. Vitamins included per standard formulation. Cultures grown in 10 mL anaerobic pressure tubes or serum bottles; larger studies used 50 mL medium in 160 mL serum bottles. Sampling performed with N2/CO2 (80:20) degassed hypodermic syringes. Digesters operated at 37°C mesophilic conditions.
- Cross-Mech
- MediaIngredientMech · CommunityMech · TaxonMech · TraitMech · HabitatMech · CMMMech
Composition
flowchart LR
CultureMech_015435["modified_freshwater_medium_for_diet_coculture"]
ing0_Ethanol["Ethanol"]
CultureMech_015435 --> ing0_Ethanol
CHEBI_16236["CHEBI:16236"]
ing0_Ethanol -.-> CHEBI_16236
ing1_L_Cysteine["L-Cysteine"]
CultureMech_015435 --> ing1_L_Cysteine
CHEBI_17561["CHEBI:17561"]
ing1_L_Cysteine -.-> CHEBI_17561
ing2_Sodium_sulfide_nonahydrate["Sodium sulfide nonahydrate"]
CultureMech_015435 --> ing2_Sodium_sulfide_nonahydrate
CHEBI_76209["CHEBI:76209"]
ing2_Sodium_sulfide_nonahydrate -.-> CHEBI_76209
Ingredients (3)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Ethanol
C2H6O 46.069 g/mol
Cross-Mech: MediaIngredientMech · CMMMech
|
20.0 MILLIMOLAR |
CHEBI:16236
ethanol
|
|
| 2 |
L-Cysteine
C3H7NO2S 121.161 g/mol
Cross-Mech: MediaIngredientMech · CMMMech
|
1.0 MILLIMOLAR |
CHEBI:17561
L-cysteine
|
|
| 3 |
Sodium sulfide nonahydrate
9H2O.2Na.S 240.182 g/mol
Cross-Mech: MediaIngredientMech · CMMMech
|
0.5 MILLIMOLAR |
CHEBI:76209
sodium sulfide nonahydrate
|
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-03-15T00:15:00.415624Z | communitymech-importer-v1.0 | Imported from CommunityMech | Created from CommunityMech:000032 growth_media record |
| 2026-03-17T17:06:21.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:34.319407+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Modified Freshwater Medium for DIET Coculture" to "modified_freshwater_medium_for_diet_coculture" for consistent matching |
| 2026-05-24T04:38:33.279095+00:00 | backfill_source_environment.py | BACKFILLED_SOURCE_ENVIRONMENT | added=1 env(s) from CommunityMech |
| 2026-06-05T07:41:57.393088+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 2 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-09-13T00:00:00-07:00 | repair_communitymech_sources_score10_batch10.py | ADDED_COMMUNITYMECH_STRUCTURED_SOURCES_BATCH10 | Promoted CommunityMech upstream IDs into sources[] for source-provenance scoring. |