modified_freshwater_medium_for_diet_coculture

CultureMech:015435 specialized DEFINED LIQUID
Original name: Modified Freshwater Medium for DIET Coculture

Overview

Notes
Headspace gas: N2/CO2 (80:20) Vessel type: Anaerobic pressure tubes or serum bottles (10 mL cultures); 160 mL serum bottles with 50 mL medium for larger cultures Modified freshwater medium boiled to reduce oxygen solubility, then cooled under N2/CO2 (80:20) gas mixture. Ethanol (20 mM) and other additives added from anaerobic sterile stocks: 1 mM cysteine and 0.5 mM Na2S·9H2O as reducing agents. Bicarbonate/CO2 serves as sole electron acceptor. Vitamins included per standard formulation. Cultures grown in 10 mL anaerobic pressure tubes or serum bottles; larger studies used 50 mL medium in 160 mL serum bottles. Sampling performed with N2/CO2 (80:20) degassed hypodermic syringes. Digesters operated at 37°C mesophilic conditions.
Cross-Mech
MediaIngredientMech · CommunityMech · TaxonMech · TraitMech · HabitatMech · CMMMech

Composition

flowchart LR
    CultureMech_015435["modified_freshwater_medium_for_diet_coculture"]
    ing0_Ethanol["Ethanol"]
    CultureMech_015435 --> ing0_Ethanol
    CHEBI_16236["CHEBI:16236"]
    ing0_Ethanol -.-> CHEBI_16236
    ing1_L_Cysteine["L-Cysteine"]
    CultureMech_015435 --> ing1_L_Cysteine
    CHEBI_17561["CHEBI:17561"]
    ing1_L_Cysteine -.-> CHEBI_17561
    ing2_Sodium_sulfide_nonahydrate["Sodium sulfide nonahydrate"]
    CultureMech_015435 --> ing2_Sodium_sulfide_nonahydrate
    CHEBI_76209["CHEBI:76209"]
    ing2_Sodium_sulfide_nonahydrate -.-> CHEBI_76209

Ingredients (3)

# Ingredient Concentration Ontology Notes
1 Ethanol
C2H6O 46.069 g/mol
20.0 MILLIMOLAR CHEBI:16236
ethanol
2 L-Cysteine
C3H7NO2S 121.161 g/mol
1.0 MILLIMOLAR CHEBI:17561
L-cysteine
3 Sodium sulfide nonahydrate
9H2O.2Na.S 240.182 g/mol
0.5 MILLIMOLAR CHEBI:76209
sodium sulfide nonahydrate

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-03-15T00:15:00.415624Z communitymech-importer-v1.0 Imported from CommunityMech Created from CommunityMech:000032 growth_media record
2026-03-17T17:06:21.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:34.319407+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "Modified Freshwater Medium for DIET Coculture" to "modified_freshwater_medium_for_diet_coculture" for consistent matching
2026-05-24T04:38:33.279095+00:00 backfill_source_environment.py BACKFILLED_SOURCE_ENVIRONMENT added=1 env(s) from CommunityMech
2026-06-05T07:41:57.393088+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 2 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-09-13T00:00:00-07:00 repair_communitymech_sources_score10_batch10.py ADDED_COMMUNITYMECH_STRUCTURED_SOURCES_BATCH10 Promoted CommunityMech upstream IDs into sources[] for source-provenance scoring.