nitrogen_free_medium_for_leptospirillum_ferrodiazotrophum

CultureMech:015436 bacterial DEFINED LIQUID
Original name: Nitrogen-Free Medium for Leptospirillum ferrodiazotrophum

Overview

pH
1.7
Notes
Nitrogen-free medium developed for selective isolation of Leptospirillum ferrodiazotrophum (Leptospirillum group III), the nitrogen-fixing member of Richmond Mine biofilm. Richmond Mine AMD biofilm sample naturally abundant in group III was homogenized, filtered, and serially diluted into nitrogen-free liquid medium. Culture grew autotrophically to maximum density ~10^6 cells/ml, oxidizing ferrous iron as sole energy source. Ammonium sulfate deliberately omitted to select for diazotrophic organisms capable of nitrogen fixation. This selective isolation strategy was guided by metagenomic data showing a single nif operon on a Leptospirillum group III genome fragment. Axenic culture confirmed by 16S rRNA-ITS clone library analysis. Note: This medium supports L. ferrodiazotrophum but not the complete biofilm community.

Composition

flowchart LR
    CultureMech_015436["nitrogen_free_medium_for_leptospirillum_ferrodiazotrophum"]
    ing0_Iron_II__sulfate["Iron(II) sulfate"]
    CultureMech_015436 --> ing0_Iron_II__sulfate
    CHEBI_75832["CHEBI:75832"]
    ing0_Iron_II__sulfate -.-> CHEBI_75832
    ing1_Magnesium_sulfate["Magnesium sulfate"]
    CultureMech_015436 --> ing1_Magnesium_sulfate
    CHEBI_32599["CHEBI:32599"]
    ing1_Magnesium_sulfate -.-> CHEBI_32599
    ing2_Monopotassium_phosphate["Monopotassium phosphate"]
    CultureMech_015436 --> ing2_Monopotassium_phosphate
    CHEBI_63036["CHEBI:63036"]
    ing2_Monopotassium_phosphate -.-> CHEBI_63036

Ingredients (3)

# Ingredient Concentration Ontology Notes
1 Iron(II) sulfate
Fe.O4S 151.908 g/mol
30.0 G_PER_L CHEBI:75832
iron(2+) sulfate (anhydrous)
2 Magnesium sulfate
Mg.O4S 120.368 g/mol
0.4 G_PER_L CHEBI:32599
magnesium sulfate
3 Monopotassium phosphate
H2O4P.K 136.084 g/mol
0.05 G_PER_L CHEBI:63036
potassium dihydrogen phosphate

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-03-15T00:15:00.445462Z communitymech-importer-v1.0 Imported from CommunityMech Created from CommunityMech:000059 growth_media record
2026-03-17T06:30:00.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:07.624740+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "Nitrogen-Free Medium for Leptospirillum ferrodiazotrophum" to "nitrogen_free_medium_for_leptospirillum_ferrodiazotrophum" for consistent matching
2026-05-24T04:38:33.284210+00:00 backfill_source_environment.py BACKFILLED_SOURCE_ENVIRONMENT added=1 env(s) from CommunityMech
2026-06-05T07:40:29.560526+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 2 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-09-13T00:00:00-07:00 repair_communitymech_sources_score10_batch10.py ADDED_COMMUNITYMECH_STRUCTURED_SOURCES_BATCH10 Promoted CommunityMech upstream IDs into sources[] for source-provenance scoring.