Overview
- External ontology
- jcm.grmd:1365 (source link unavailable) — ACIDIC LOW SALT MINERAL MEDIUM
- Applications
-
- Microbial cultivation
- Notes
- Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=1365
Composition
flowchart LR
CultureMech_015843["acidic_low_salt_mineral_medium"]
ing0_MgSO4_7H2O["MgSO4·7H2O"]
CultureMech_015843 --> ing0_MgSO4_7H2O
CHEBI_31795["CHEBI:31795"]
ing0_MgSO4_7H2O -.-> CHEBI_31795
ing1_CaCl2_2H2O["CaCl2·2H2O"]
CultureMech_015843 --> ing1_CaCl2_2H2O
CHEBI_86158["CHEBI:86158"]
ing1_CaCl2_2H2O -.-> CHEBI_86158
ing2_K2SO4["K2SO4"]
CultureMech_015843 --> ing2_K2SO4
CHEBI_32036["CHEBI:32036"]
ing2_K2SO4 -.-> CHEBI_32036
ing3__NH4_2SO4["(NH4)2SO4"]
CultureMech_015843 --> ing3__NH4_2SO4
CHEBI_62946["CHEBI:62946"]
ing3__NH4_2SO4 -.-> CHEBI_62946
ing4_FeCl2_solution__see_Medium_No__187__["FeCl2 solution (see Medium No. 187 )"]
CultureMech_015843 --> ing4_FeCl2_solution__see_Medium_No__187__
ing5_Trace_element_solution__see_Medium_No__187__["Trace element solution (see Medium No. 187 )"]
CultureMech_015843 --> ing5_Trace_element_solution__see_Medium_No__187__
ing6_Selenite_tungustate_solution__see_below_["Selenite-tungustate solution (see below)"]
CultureMech_015843 --> ing6_Selenite_tungustate_solution__see_below_
ing7_Distilled_water["Distilled water"]
CultureMech_015843 --> ing7_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing7_Distilled_water -.-> CHEBI_15377
ing8_0_1_M_KH2PO4_solution["0.1 M KH2PO4 solution"]
CultureMech_015843 --> ing8_0_1_M_KH2PO4_solution
ing9_Trace_vitamins___see_Medium_No__197__["Trace vitamins* (see Medium No. 197 )"]
CultureMech_015843 --> ing9_Trace_vitamins___see_Medium_No__197__
ing10_Vitamin_B12_solution___see_Medium_No__403__["Vitamin B12 solution* (see Medium No. 403 )"]
CultureMech_015843 --> ing10_Vitamin_B12_solution___see_Medium_No__403__
ing11_1_0_mM_CeCl3_solution_["1.0 mM CeCl3 solution*"]
CultureMech_015843 --> ing11_1_0_mM_CeCl3_solution_
ing12_1_0_N_H2SO4_solution_["1.0 N H2SO4 solution*"]
CultureMech_015843 --> ing12_1_0_N_H2SO4_solution_
ing13_NaOH["NaOH"]
CultureMech_015843 --> ing13_NaOH
CHEBI_32145["CHEBI:32145"]
ing13_NaOH -.-> CHEBI_32145
ing14_Na2SeO3_5H2O["Na2SeO3·5H2O"]
CultureMech_015843 --> ing14_Na2SeO3_5H2O
CHEBI_131361["CHEBI:131361"]
ing14_Na2SeO3_5H2O -.-> CHEBI_131361
ing15_Na2WO4_2H2O["Na2WO4·2H2O"]
CultureMech_015843 --> ing15_Na2WO4_2H2O
CHEBI_63939["CHEBI:63939"]
ing15_Na2WO4_2H2O -.-> CHEBI_63939
Ingredients (16)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
MgSO4·7H2O
7H2O.Mg.O4S 246.473 g/mol
|
98.6 MG_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 2 |
CaCl2·2H2O
Ca.2Cl.2H2O 147.014 g/mol
|
14.7 MG_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 3 |
K2SO4
2K.O4S 174.259 g/mol
|
34.9 MG_PER_L |
CHEBI:32036
potassium sulfate
|
|
| 4 |
(NH4)2SO4
2H4N.O4S 132.141 g/mol
|
0.264 G_PER_L |
CHEBI:62946
ammonium sulfate
|
|
| 5 | FeCl2 solution (see Medium No. 187 ) | 1.0 ML_PER_L | ||
| 6 | Trace element solution (see Medium No. 187 ) | 1.0 ML_PER_L | ||
| 7 | Selenite-tungustate solution (see below) | 1.0 ML_PER_L | ||
| 8 |
Distilled water
H2O 18.015 g/mol
|
1.0 ML_PER_L |
CHEBI:15377
water
|
|
| 9 | 0.1 M KH2PO4 solution | 1.0 ML_PER_L | ||
| 10 | Trace vitamins* (see Medium No. 197 ) | 10.0 ML_PER_L | ||
| 11 | Vitamin B12 solution* (see Medium No. 403 ) | 4.0 ML_PER_L | ||
| 12 | 1.0 mM CeCl3 solution* | 1.0 ML_PER_L | ||
| 13 | 1.0 N H2SO4 solution* | 4.0 ML_PER_L | ||
| 14 |
NaOH
HO.Na 39.997 g/mol
|
0.4 G_PER_L |
CHEBI:32145
sodium hydroxide
|
|
| 15 |
Na2SeO3·5H2O
5H2O.2Na.O3Se 263.012 g/mol
|
0.06 G_PER_L |
CHEBI:131361
disodium selenite pentahydrate
|
|
| 16 |
Na2WO4·2H2O
2H2O.2Na.O4W 329.846 g/mol
|
0.08 G_PER_L |
CHEBI:63939
sodium tungstate dihydrate
|
Preparation
- Mix components thoroughly.
- For preparation of solid medium, add 15.0 g/L agarose.
- Autoclave and, after cooling to 60C, add the following solutions (autoclaved or *filter-sterilized): Check pH to be 2.0 to 3.0.
- Cultivate with methane or methanol as a substrate as described below: Methane.
- Aseptically distribute the medium into sterile serum bottles (leave ≥ 80% gas phase by volume) and seal with rubber stoppers.
- Add sterile CO2 and methane (respectively 2-10% and 5-20% by volume) in the gas phase.
- Cultivate with shaking.
- Methanol: Aseptically distribute the medium into culture vessels (e.g., 10 ml in 60 ml serum bottles), supplement with 0.4-1.0 ml per liter methanol (filter-sterilized) and seal with rubber stoppers.
- Add sterile CO2 (2-10% by volume) in the gas phase.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-06-02T07:08:51.886117+00:00 | jcm-grmd-import | Scraped from JCM GRMD database | Direct import from JCM GRMD=1365. Ingredients captured verbatim; CHEBI/MediaIngredientMech enrichment and category (bacterial/archaea) review are downstream steps. |
| 2026-06-03T02:00:03.338054Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-06-03T07:12:22.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-08-15T20:07:34.049328+00:00 | dedupe_identical_ingredients.py | REMOVED_DUPLICATE_INGREDIENT_ROWS | Removed 1 ingredient row(s) that were identical in every field to another row in this record, which made the recipe read as double-strength in those components (#263): Distilled water. |