Overview
- External ontology
- jcm.grmd:1430 (source link unavailable) — SEMI-SOLID HETEROTROPHIC GROWTH MEDIUM FOR ALPHAPROTEOBACTERIA
- Applications
-
- Microbial cultivation
- pH
- 6.7
- Notes
- Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=1430
Composition
flowchart LR
CultureMech_015865["semi_solid_heterotrophic_growth_medium_for_alphaproteobacteria"]
ing0_NaCl["NaCl"]
CultureMech_015865 --> ing0_NaCl
CHEBI_26710["CHEBI:26710"]
ing0_NaCl -.-> CHEBI_26710
ing1_MgCl2_6H2O["MgCl2·6H2O"]
CultureMech_015865 --> ing1_MgCl2_6H2O
CHEBI_86345["CHEBI:86345"]
ing1_MgCl2_6H2O -.-> CHEBI_86345
ing2_Na2SO4["Na2SO4"]
CultureMech_015865 --> ing2_Na2SO4
CHEBI_32149["CHEBI:32149"]
ing2_Na2SO4 -.-> CHEBI_32149
ing3_KCl["KCl"]
CultureMech_015865 --> ing3_KCl
CHEBI_32588["CHEBI:32588"]
ing3_KCl -.-> CHEBI_32588
ing4_CaCl2_2H2O["CaCl2·2H2O"]
CultureMech_015865 --> ing4_CaCl2_2H2O
CHEBI_86158["CHEBI:86158"]
ing4_CaCl2_2H2O -.-> CHEBI_86158
ing5_NH4Cl["NH4Cl"]
CultureMech_015865 --> ing5_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing5_NH4Cl -.-> CHEBI_31206
ing6_NaHCO3["NaHCO3"]
CultureMech_015865 --> ing6_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing6_NaHCO3 -.-> CHEBI_32139
ing7_HEPES["HEPES"]
CultureMech_015865 --> ing7_HEPES
CHEBI_46756["CHEBI:46756"]
ing7_HEPES -.-> CHEBI_46756
ing8_Yeast_extract__BD_Difco_["Yeast extract (BD-Difco)"]
CultureMech_015865 --> ing8_Yeast_extract__BD_Difco_
ing9_Disodium_succinate["Disodium succinate"]
CultureMech_015865 --> ing9_Disodium_succinate
CHEBI_63675["CHEBI:63675"]
ing9_Disodium_succinate -.-> CHEBI_63675
ing10_Modified_Wolfe_s_mineral_solution__see_Medium_No__915__["Modified Wolfe’s mineral solution (see Medium No. 915 )"]
CultureMech_015865 --> ing10_Modified_Wolfe_s_mineral_solution__see_Medium_No__915__
ing11_Resazurin["Resazurin"]
CultureMech_015865 --> ing11_Resazurin
CHEBI_8806["CHEBI:8806"]
ing11_Resazurin -.-> CHEBI_8806
ing12_Distilled_waterv["Distilled waterv"]
CultureMech_015865 --> ing12_Distilled_waterv
ing13_Agarose["Agarose"]
CultureMech_015865 --> ing13_Agarose
CHEBI_2511["CHEBI:2511"]
ing13_Agarose -.-> CHEBI_2511
ing14_0_5_M_Potassium_phosphate_buffer__pH_7_0_["0.5 M Potassium phosphate buffer (pH 7.0)"]
CultureMech_015865 --> ing14_0_5_M_Potassium_phosphate_buffer__pH_7_0_
ing15_Vitamin_solution___see_Medium_No__915__["Vitamin solution* (see Medium No. 915 )"]
CultureMech_015865 --> ing15_Vitamin_solution___see_Medium_No__915__
ing16_0_01_M_FeSO4_7H2O_solution__in_0_02_N_HCl_["0.01 M FeSO4·7H2O solution (in 0.02 N HCl)"]
CultureMech_015865 --> ing16_0_01_M_FeSO4_7H2O_solution__in_0_02_N_HCl_
ing17_5__L_Cysteine_HCl_H2O_solution["5% L-Cysteine·HCl·H2O solution"]
CultureMech_015865 --> ing17_5__L_Cysteine_HCl_H2O_solution
Ingredients (18)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
NaCl
Cl.Na 58.443 g/mol
|
20.0 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 2 |
MgCl2·6H2O
2Cl.6H2O.Mg 203.301 g/mol
|
6.0 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
|
| 3 |
Na2SO4
2Na.O4S 142.043 g/mol
|
3.24 G_PER_L |
CHEBI:32149
sodium sulfate
|
|
| 4 |
KCl
Cl.K 74.551 g/mol
|
0.5 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 5 |
CaCl2·2H2O
Ca.2Cl.2H2O 147.014 g/mol
|
1.0 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 6 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.3 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 7 |
NaHCO3
CHO3.Na 84.006 g/mol
|
1.26 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 8 | HEPES | 2.4 G_PER_L |
CHEBI:46756
HEPES
|
|
| 9 | Yeast extract (BD-Difco) | 0.2 G_PER_L | ||
| 10 |
Disodium succinate
C4H4O4.2Na 162.052 g/mol
|
1.0 G_PER_L |
CHEBI:63675
sodium succinate (anhydrous)
|
|
| 11 | Modified Wolfe’s mineral solution (see Medium No. 915 ) | 5.0 ML_PER_L | ||
| 12 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.2 MG_PER_L |
CHEBI:8806
Resazurin
|
|
| 13 | Distilled waterv | 1.0 ML_PER_L | ||
| 14 |
Agarose
(C12H18O9)n.C12H20O10 630.549 g/mol
|
1.6 G_PER_L |
CHEBI:2511
agarose
|
|
| 15 | 0.5 M Potassium phosphate buffer (pH 7.0) | 1.8 ML_PER_L | ||
| 16 | Vitamin solution* (see Medium No. 915 ) | 0.5 ML_PER_L | ||
| 17 | 0.01 M FeSO4·7H2O solution (in 0.02 N HCl) | 3.0 ML_PER_L | ||
| 18 | 5% L-Cysteine·HCl·H2O solution | 8.0 ML_PER_L |
Preparation
- Mix components thoroughly, except agarose, and adjust pH to 6.7.
- Add agarose to the medium and autoclave under a N2 gas atmosphere.
- After cooling to 50C, add the following solutions to the medium aseptically and anaerobically (autoclaved or *filter-sterilized).
- Keep the medium temperature at 50 C until the medium is distributed into sterile screw-capped test tubes as described below: Adjust pH to 7.0 with sterile HCl or NaOH solution.
- Dispense the medium to sterile screw-capped test tubes (typically 11 ml medium into sterile Hungate tubes) under air and cap.
- Allow to stand until the medium is solidified and a O2-gradient formed (as evidenced by a pink upper oxic zone and a colorless lower anoxic zone).
- Inoculate cells just below the pink-colorless interface in the medium tube using a syringe.
- Comment: The medium tubes can be stocked under a N2 gas atmosphere.
- In this case, prior to use, fill the head space with air and allow to stand until the O2 gradient is formed.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-06-02T07:09:15.791829+00:00 | jcm-grmd-import | Scraped from JCM GRMD database | Direct import from JCM GRMD=1430. Ingredients captured verbatim; CHEBI/MediaIngredientMech enrichment and category (bacterial/archaea) review are downstream steps. |
| 2026-06-03T02:00:03.574504Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-06-03T07:12:22.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |