{"cross_mech":[],"family":{"alphafold_models":9318,"candidate_reasons":["pfam_previous_unknown_name"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":0,"protein_traits_record":false,"records_by_mech":{},"scanned":false},"curation_status":"SEEDED","demotion_reasons":[],"description":"This entry contains 2-phospho-L-lactate transferase (CofD), phosphoenolpyruvate transferase and related sequences. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2)diphospho-(5') guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl- 8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [[cite:PUB00013496]] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. CofD monomer contains 12 beta- strands, seven of them form a Rossmann fold, and 13 alpha-helices [[cite:PUB00050875]].","domain_architectures":45,"interpro_id":"IPR002882","known_evidence_count":null,"matches":14214,"name":"2-phospho-L-lactate transferase CofD","partial_evidence_count":null,"pfam_id":"PF01933","proteins":14174,"proteomes":10830,"short_name":"CofD","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF01933","structures":13,"taxa":17069,"unknown_status":"EX_DUF"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF01933.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":9318,"domain_architectures":45,"matches":14214,"proteins":14174,"proteomes":10830,"structures":13,"taxa":17069},"curation_status":"SEEDED","description":"This entry contains 2-phospho-L-lactate transferase (CofD), phosphoenolpyruvate transferase and related sequences. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2)diphospho-(5') guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl- 8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [[cite:PUB00013496]] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. CofD monomer contains 12 beta- strands, seven of them form a Rossmann fold, and 13 alpha-helices [[cite:PUB00050875]].","id":"Pfam:PF01933","interpro_id":"InterPro:IPR002882","name":"2-phospho-L-lactate transferase CofD","pfam_id":"PF01933","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"EX_DUF","short_name":"CofD","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF01933"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF01933.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"14850e980bce5cf8cb2f3db12845c938eca08db53e3f1f4b28addbb4e9a21b0d"}},"protein_examples":{"candidate_count":5,"discovery_scanned":true,"example_count":5,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/molecular_function/go/lppg-fo-2-phospho-l-lactate-transferase-activity-go0043743.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0043743","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/lppg-fo-2-phospho-l-lactate-transferase-activity-go0043743.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/uridine-diphosphate-n-acetylglucosamine-binding-protein-yvck-tigr01826.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:TIGR01826","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/uridine-diphosphate-n-acetylglucosamine-binding-protein-yvck-tigr01826.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/cdd/family-of-mostly-uncharacterized-proteins-similar-to-b-subtilis-yvck-o-cd07187.yaml","qualification_status":"NOT_ASSESSED","record_id":"CDD:cd07187","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/family-of-mostly-uncharacterized-proteins-similar-to-b-subtilis-yvck-o-cd07187.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/cofd-pf01933.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF01933","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cofd-pf01933.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/cofd-like-domain-superfamily-ipr038136.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR038136","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/cofd-like-domain-superfamily-ipr038136.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/cofd-like-domains-3-40-50-10680.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.40.50.10680","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/cofd-like-domains-3-40-50-10680.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:O06974","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF01933"],"protein_name":"Gluconeogenesis factor","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"19c5d124ff4c4c7f10adfe3701723b8d18547e43cfbe052b1331c38b2212c68e","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MGQKPKIAIFGGGTGLSVLLRGLKHKPVDITAIVTVADDGGSSGRLRNELKIPPPGDIRNVLAALSDVEPLVEDLFQHRFNKGNDLTGHSLGNLILAAMTNITGDFFHAVTEMSKVLNVRGKVLPAANASVVLHAEMEDGRVVSGESTIPEYGQRIKRVFLTPEQIDPLPETIDVIREADLIIIGPGSLYTSILPNLLVPKIGEEVIKAPAKKVYICNVMTQPGETLHYTAADHVKALNQHMGCGFIDTILVNSEDIPDEIKRKYEMESARPVDFDIEELKAMGLEVIRDQIVTYKNDVIRHDTHKVASLLVDLLKE","sequence_length":317,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"19c5d124ff4c4c7f10adfe3701723b8d18547e43cfbe052b1331c38b2212c68e","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/O06974.json","taxon_id":"224308","uniprot_accession":"O06974","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Saccharomyces cerevisiae (strain ATCC 204508 / S288c)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/molecular_function/go/lppg-fo-2-phospho-l-lactate-transferase-activity-go0043743.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0043743","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/lppg-fo-2-phospho-l-lactate-transferase-activity-go0043743.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/cdd/family-of-mostly-uncharacterized-proteins-similar-to-b-subtilis-yvck-o-cd07187.yaml","qualification_status":"NOT_ASSESSED","record_id":"CDD:cd07187","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/family-of-mostly-uncharacterized-proteins-similar-to-b-subtilis-yvck-o-cd07187.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/cofd-like-domain-superfamily-ipr038136.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR038136","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/cofd-like-domain-superfamily-ipr038136.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/cofd-like-domains-3-40-50-10680.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.40.50.10680","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/cofd-like-domains-3-40-50-10680.yaml"}],"pfam_ids":["PF01933"],"protein_name":"Uncharacterized protein YNL011C","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MNVVVCSGGTATNSLTPCFSNISILKGHELTYILPISDNGGSTSEILRIVGGPAIGDIRSRIVRLLQDEQLVELFGHRLPNDKLLAKKEWNEIVEGSHPIWKNISIEVKEMCRSFIIHMQAELLKKIKHSNPFQFESASIGNFFLTGARLFLGSLDASIELMMRIGRCSPLVHVIPCINTNHTHHISALLTNGEMITGQSQISHPSKSVPKDNSIAHSAKFIHLLGSYDDHLKILLDDEEEEAEEEYANPIYILPELKNSQLHFDKLDESQNLPAPVHRILYINPYGEEIKPMGNPRAISKVKKADMVVYSIGSLMTSLLPILILGNLAEVILESNNTKKVLLINNKYDREVFGLDGLHYVQMIIDSMSRAIAGYRQSKGVHSENDDFEWQDFITDIVYLKNGEIEIDETIFEKHSIRCHQIASSDKMESEELEKVLNQIGLKN","sequence_length":444,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"267c22005902ba692f4723c59d59485041e78bf0ac6403ff66356d2cf99f8065","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P53980.json","taxon_id":"559292","uniprot_accession":"P53980","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli (strain K12)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/molecular_function/go/lppg-fo-2-phospho-l-lactate-transferase-activity-go0043743.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0043743","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/lppg-fo-2-phospho-l-lactate-transferase-activity-go0043743.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/uridine-diphosphate-n-acetylglucosamine-binding-protein-yvck-tigr01826.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:TIGR01826","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/uridine-diphosphate-n-acetylglucosamine-binding-protein-yvck-tigr01826.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/cdd/family-of-mostly-uncharacterized-proteins-similar-to-b-subtilis-yvck-o-cd07187.yaml","qualification_status":"NOT_ASSESSED","record_id":"CDD:cd07187","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/family-of-mostly-uncharacterized-proteins-similar-to-b-subtilis-yvck-o-cd07187.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/cofd-like-domain-superfamily-ipr038136.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR038136","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/cofd-like-domain-superfamily-ipr038136.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/cofd-like-domains-3-40-50-10680.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.40.50.10680","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/cofd-like-domains-3-40-50-10680.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:P75767","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF01933"],"protein_name":"Putative gluconeogenesis factor","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"de08be1ae9bc3d5a308ab24bc3adef02798b8c3e678f57aca0bb6e76f1b1d8df","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQALG","sequence_length":302,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"de08be1ae9bc3d5a308ab24bc3adef02798b8c3e678f57aca0bb6e76f1b1d8df","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P75767.json","taxon_id":"83333","uniprot_accession":"P75767","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/molecular_function/go/lppg-fo-2-phospho-l-lactate-transferase-activity-go0043743.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0043743","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/lppg-fo-2-phospho-l-lactate-transferase-activity-go0043743.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/pathway/go/f420-0-metabolic-process-go0052645.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0052645","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/f420-0-metabolic-process-go0052645.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/2-phospho-l-lactate-transferase-tigr01819.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:TIGR01819","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/2-phospho-l-lactate-transferase-tigr01819.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/cdd/lppg-fo-2-phospho-l-lactate-transferase-important-in-f420-biosynthesis-cd07186.yaml","qualification_status":"NOT_ASSESSED","record_id":"CDD:cd07186","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/lppg-fo-2-phospho-l-lactate-transferase-important-in-f420-biosynthesis-cd07186.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/cofd-pf01933.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF01933","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cofd-pf01933.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/cofd-like-domain-superfamily-ipr038136.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR038136","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/cofd-like-domain-superfamily-ipr038136.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/cofd-like-domain-1-10-8-240.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:1.10.8.240","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/cofd-like-domain-1-10-8-240.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/cofd-like-domains-3-40-50-10680.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.40.50.10680","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/cofd-like-domains-3-40-50-10680.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:Q58653","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF01933"],"protein_name":"2-phospho-L-lactate transferase","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"0c5085125c417dee82299d0d0a2c91facaaf926e404d3b58dbe3435bb37752fc","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MIFVITVLSGGTGTPKLLQGLKRVVNNEELAVIVNTGEDTWIGDLYLSPDVDTVLYTLADLINEETWYGVKEDTFYTHEQLKNLGFDEVLRIGDKDRALKMHKTYYLKRGHKLSEVVDMEKVALGIKAKVIPMTDDRVETKILAKVDGKVDLLKFHDFWVKRKGDVEVLDVIYENSLYAKPCEKAVEAIKNSDLVIIGPSNPITSIGPILSLNGIKELLKDKKVVVVSPIVGNSAVSGPAGKLMKAKGYDVSVKGIYEFYKDIVDVLVIDNVDKEIAKEIPCEVLITNTIMKTLDDKVRLAKNIIEFCGSL","sequence_length":311,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"0c5085125c417dee82299d0d0a2c91facaaf926e404d3b58dbe3435bb37752fc","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/Q58653.json","taxon_id":"243232","uniprot_accession":"Q58653","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Kitasatospora aureofaciens","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/cofd-pf01933.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF01933","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/cofd-pf01933.yaml"}],"pfam_ids":["PF01933"],"protein_name":"Phosphoenolpyruvate transferase","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MRIVALAGGIGGARFLRGLLAAVGPQDEITVIGNTGDDIHLYGLKVCPDLDTVMYTLGGGIHEEQGWGRADETWSIKAEMKEYGVGPEWFGLGDRDFATHLVRSQMLTAGYSLSQVTEALCVRWNPGVRLLPMSDDRVETHVRITDEQGTRAVHFQEYWVRLHAAVDAEAIIPVGADTAKPAPGVLEAIAEADVILFPPSNPVVSIGTILAVPGIREAVAAAPAPVVGLSPIIGGAPVRGMADKVLAAVGVEATAEAVALNYGPDLIDGWLVDTADEHAVAAVEAAGIACRAVPLLMTDVEATAEMARTALALAEQVRHGS","sequence_length":321,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"48b1079fe3d42b2518bf4285126b1af223e7868cf6e948a4861d00f9c9ad3c2e","sequence_version":2,"source_url":"https://rest.uniprot.org/uniprotkb/Q75UN1.json","taxon_id":"1894","uniprot_accession":"Q75UN1","uniprot_release":"2026_03"}],"pfam_id":"PF01933","short_name":"CofD","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
