{"cross_mech":[],"family":{"alphafold_models":11674,"candidate_reasons":["pfam_previous_unknown_name"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":0,"protein_traits_record":false,"records_by_mech":{},"scanned":false},"curation_status":"SEEDED","demotion_reasons":[],"description":"Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants [[cite:PUB00043747]]. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing [[cite:PUB00044700]]. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes [[cite:PUB00043747]]. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [[cite:PUB00019352]][[cite:PUB00019353]].","domain_architectures":130,"interpro_id":"IPR001890","known_evidence_count":null,"matches":23182,"name":"CRS1 / YhbY (CRM) domain","partial_evidence_count":null,"pfam_id":"PF01985","proteins":15752,"proteomes":8486,"short_name":"CRS1_YhbY","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF01985","structures":6,"taxa":12703,"unknown_status":"EX_DUF"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF01985.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":11674,"domain_architectures":130,"matches":23182,"proteins":15752,"proteomes":8486,"structures":6,"taxa":12703},"curation_status":"SEEDED","description":"Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants [[cite:PUB00043747]]. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing [[cite:PUB00044700]]. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes [[cite:PUB00043747]]. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [[cite:PUB00019352]][[cite:PUB00019353]].","id":"Pfam:PF01985","interpro_id":"InterPro:IPR001890","name":"CRS1 / YhbY (CRM) domain","pfam_id":"PF01985","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"EX_DUF","short_name":"CRS1_YhbY","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF01985"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF01985.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"ff1fbf50ab8824fb505304a37086d19e09d4681f35eabbe1bb8ec2bdae89d840"}},"protein_examples":{"candidate_count":9,"discovery_scanned":true,"example_count":9,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Arabidopsis thaliana","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR001890","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/crs1-yhby-pf01985.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF01985","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/crs1-yhby-pf01985.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR035920","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/profile/crm.yaml","qualification_status":"NOT_ASSESSED","record_id":"PROSITE:PS51295","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/crm.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.110.60","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:F4J2U9","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF01985"],"protein_name":"CRM-domain containing factor CFM3A, chloroplastic/mitochondrial","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"3e60fa47cafac6182171c82e74d7772848b6458d776d16b38031a4833591f586","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MAMKPSLHFCPTTVTKKFVYSFQSSFCFRFLRYSSSISLGSCKGVTFSSRNDQIASRRFSFSRDCNNGVWLENWNRIQKRNQPKPPKVVVNYRKEGRFSGSEIVSGDDNRSRDGDGSTMEKIVEKLKKYGYMEEVQNKEIEQERRIEKGSVEDIFYVEEGKLPNTRGGFTEESLLGGENVIGSNGDVGFPWEKMSAKEKKELEAEWTAKKENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQRREETPPEAVIENHDETTTMVDKSDEKVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRREGLLKHISTMQAKAKQLRAEIEQMEKVTDKGDEELYNKLDMAYASSDEETDEEDDDDAFPETYAEGEDGEEGEILAGELSETEDKDLDSNESETGFGDDSVLFAEDLHTKSEDLPNKKVRLQHQS","sequence_length":881,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"3e60fa47cafac6182171c82e74d7772848b6458d776d16b38031a4833591f586","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/F4J2U9.json","taxon_id":"3702","uniprot_accession":"F4J2U9","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Arabidopsis thaliana","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/pathway/go/plastid-rrna-transcription-go0042794.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0042794","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/plastid-rrna-transcription-go0042794.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR001890","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR035920","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/profile/crm.yaml","qualification_status":"NOT_ASSESSED","record_id":"PROSITE:PS51295","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/crm.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.110.60","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml"}],"pfam_ids":["PF01985"],"protein_name":"CRM-domain containing factor CFM3B, chloroplastic","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MAINSSHHFCPMTTTTTTSAKFVDSLGSSFCKFHGTSSSISLRSYRFGFSFMKNVKRLSCEGSSSSSSSRNENWNRTQKQNQFRPSKVVLNRRKDERFSDLGVISGENSSRSGDVGGGSGSSSTMEKIVEKLKKYGFVDEDQFQDKEVEQERRIEKSSVEERFYVEERRGGFSEESPFGVYGGNDEVKFPWEKVSSMEKKELVNGEWTAKKESRYSLAEMTLSEFELNRLRNVMFRTKSKMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIWRSGTSIALYNYKGGSNRDGSGNMNKQVYRRAERLPSSLPTSTVDQSVQLVNLPQLEKEPTVVGNKDRTSPQEVEYEDEINELLEGLGPRYTDWQGGYPLPVDADLLPGIVPGYEPPFRALPYGVRSTLGTKEATSLRRIATVLPPHFALGRSRQLQGLATAMVKLWQKSLIAKVALKRGVQLTTSERMAEDIKRLTGGMLLSRNKDFLVFYRGKSFLSLEVGEALMEKEMLVRTLQDEEEQARLRASSALVVPSIKANQQLARTLQDKEEQARPSALVLPSTKANQNLVSAGTLGETLDATGKWGKNLDNDDHVEEMKQEVEKVRSAKLVRKLERKLAFAEKKLLKAERALAKVEESLKPAEQRTDLEGITEEERFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKREALIKHIEAIQTRSEQLRAEIEQVELVKDKGDETLYDKLDMAYSSDEETEETDGEEDDVYLDTYEDEGEDDEEGGIQANGSLSETDVEFGSDESDTDFGDNSASSTTPETTFVELQNEELDVQP","sequence_length":907,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"12e2937972d0aedfe8b3d8a37043e28dfefa1cd109c378de44d28ce491bd2a18","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/F4JVH1.json","taxon_id":"3702","uniprot_accession":"F4JVH1","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli (strain K12)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/pathway/go/rrna-5-end-processing-go0000967.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0000967","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/rrna-5-end-processing-go0000967.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/ribosome-assembly-rna-binding-protein-yhby-nf007669.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF007669","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ribosome-assembly-rna-binding-protein-yhby-nf007669.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/ribosome-assembly-rna-binding-protein-yhby-tigr00253.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:TIGR00253","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ribosome-assembly-rna-binding-protein-yhby-tigr00253.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:P0AGK4","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF01985"],"protein_name":"RNA-binding protein YhbY","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"cd5e7939f3ee822bfc1f1cd70ff880ac81d10af51284625c8e2bc65e073e8a3c","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR","sequence_length":97,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"cd5e7939f3ee822bfc1f1cd70ff880ac81d10af51284625c8e2bc65e073e8a3c","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P0AGK4.json","taxon_id":"83333","uniprot_accession":"P0AGK4","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/molecular_function/go/preribosome-binding-go1990275.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:1990275","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/preribosome-binding-go1990275.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/pathway/go/rrna-5-end-processing-go0000967.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0000967","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/rrna-5-end-processing-go0000967.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/ribosome-assembly-rna-binding-protein-yhby-tigr00253.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:TIGR00253","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ribosome-assembly-rna-binding-protein-yhby-tigr00253.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR001890","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR035920","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/profile/crm.yaml","qualification_status":"NOT_ASSESSED","record_id":"PROSITE:PS51295","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/crm.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.110.60","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml"}],"pfam_ids":["PF01985"],"protein_name":"Probable RNA-binding protein YqeI","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MLTGKQKRFLRSKAHHLTPIFQVGKGGVNDNMIKQIAEALEARELIKVSVLQNCEEDKNDVAEALVKGSRSQLVQTIGNTIVLYKESKENKQIELP","sequence_length":96,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"36e25be8d9ad9eccef877cad3c492c91c626ffb74ace49e6ba2eeb937ef85c33","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P54454.json","taxon_id":"224308","uniprot_accession":"P54454","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/molecular_function/go/preribosome-binding-go1990275.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:1990275","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/preribosome-binding-go1990275.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/pathway/go/rrna-5-end-processing-go0000967.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0000967","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/rrna-5-end-processing-go0000967.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/ribosome-assembly-rna-binding-protein-yhby-tigr00253.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:TIGR00253","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ribosome-assembly-rna-binding-protein-yhby-tigr00253.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR001890","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR035920","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/profile/crm.yaml","qualification_status":"NOT_ASSESSED","record_id":"PROSITE:PS51295","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/crm.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.110.60","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml"}],"pfam_ids":["PF01985"],"protein_name":"Probable RNA-binding protein MJ0652","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MVIFMTEEQKRKLTGKMKRMLRAKAHHLEPVVWVGKEGSEKVIKEVDRQLKERGLIKVKVRKAALLYEDKYEIAEKLAKACDAEVVSVVGHVITLFRPREGWKKYLAKKPKKKVKKDEKIIELFEKFKKKAVKE","sequence_length":134,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"99500a261bb2e2ca628d82497f35f346361cab9ea6d03ef73853f727e0c0e533","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/Q58068.json","taxon_id":"243232","uniprot_accession":"Q58068","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Arabidopsis thaliana","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/pathway/go/group-i-intron-splicing-go0000372.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0000372","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/group-i-intron-splicing-go0000372.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR001890","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/crs1-yhby-pf01985.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF01985","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/crs1-yhby-pf01985.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR035920","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/profile/crm.yaml","qualification_status":"NOT_ASSESSED","record_id":"PROSITE:PS51295","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/crm.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.110.60","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml"}],"pfam_ids":["PF01985"],"protein_name":"CRM-domain containing factor CFM2, chloroplastic","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MLLPLFHQQPLILAKTFPDRIFPPFLVPNTLVSRRNVSRANSGIFCSSASGRKTLPQSAIQRIAEKLRSLGFVEEKHDSPTRRITGEESGKNSPGEIFVPLPKQLPIHRVGHTIDTSWSTPSYPVPKPGSGTAISRYHELKRVWKKETEMERKKEEKVPSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQGVVDSREKQSIAESSAPSITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADRLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGTLISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMENSSVHGNKLTENEEEIKPRAVKEDIELEAKDQKDHIQTHQMKSRQRNSPEAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQLVEDSATNETWSDGESSNMMVEEETENQHTEPEKAREKIELGYSSDLSVPSSGEENWEDDSEGEVDPLTTSSQEYQEDESESASSQRHEGNSLDSTANLSVFAETGSANASSFHDRSLPHNSFLNANRKLPGSSTGSGSQISALRERKSENDGLVTDLSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANGTSVQEVIAKLKEETGALLVSQEPSKVILYRGWGAEEEMKSFYPNNNVKSSINLPSTRSFVDDPPHVSPALIEAIRLECGL","sequence_length":1011,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"76ee3ca9400253eb46f0c3571f0dd3271d22c35a42b6dfaf978b81f91001f0ba","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/Q8L7C2.json","taxon_id":"3702","uniprot_accession":"Q8L7C2","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Arabidopsis thaliana","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR001890","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR035920","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/profile/crm.yaml","qualification_status":"NOT_ASSESSED","record_id":"PROSITE:PS51295","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/crm.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.110.60","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:Q8VYD9","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF01985"],"protein_name":"CRS2-associated factor 1, mitochondrial","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"bc4a39cf3118d6180ae446e6a85ca71c94c1c7f99d5ee8dba70cf8619ce67873","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MFLIRLSRHNPSSFTLLTRRLHDQTISSSRLRDLYNFQSPPPLSSSASENPDFNQKNNNKKKPKPQYRPPSSLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTGVCAPAVNPKVESVDGVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKDYKPPKEDDEYSSFIHRESSIDSDVDLSCSRGAQDSPDETT","sequence_length":405,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"bc4a39cf3118d6180ae446e6a85ca71c94c1c7f99d5ee8dba70cf8619ce67873","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/Q8VYD9.json","taxon_id":"3702","uniprot_accession":"Q8VYD9","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Arabidopsis thaliana","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR001890","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR035920","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/profile/crm.yaml","qualification_status":"NOT_ASSESSED","record_id":"PROSITE:PS51295","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/crm.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.110.60","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml"}],"pfam_ids":["PF01985"],"protein_name":"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MRNGINILSYPRFLSFCEVFVLLLCNFSDNPKLQTFTQMLNSLFLSARAFPSLITNSSSRRAKSSQFDQFRENRGVSDAAIKVPTAPWMKGPLLLRPDEILDTKKRNKPRKVEEKTFKALNRRESGVRGKKAMKKIVRNVEKLDEDSDSEETQMDDLSEFEYLGRIEEKVESKDRFGGKMPWEREEERFILRRMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRGGPSYSSEGQDEISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVTNGKQLKETNKSGTLLEFQELQRKFGEMDPRNLETEAEKARLEKELKSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSLKFFAYQRERAIEDLKVSLVNLQDSAF","sequence_length":720,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"894a546665cb2be5e786fca0e4add42b3d3610fa64453f6a79205ce5fece8daa","sequence_version":2,"source_url":"https://rest.uniprot.org/uniprotkb/Q9LF10.json","taxon_id":"3702","uniprot_accession":"Q9LF10","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Arabidopsis thaliana","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/pathway/go/mitochondrial-polycistronic-rna-processing-go0140040.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0140040","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/mitochondrial-polycistronic-rna-processing-go0140040.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR001890","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/rna-binding-crm-domain-ipr001890.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/crs1-yhby-pf01985.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF01985","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/crs1-yhby-pf01985.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR035920","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/yhby-like-superfamily-ipr035920.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/profile/crm.yaml","qualification_status":"NOT_ASSESSED","record_id":"PROSITE:PS51295","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/profile/crm.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.110.60","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/yhby-like-3-30-110-60.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:Q9LT57","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF01985"],"protein_name":"CRM-domain containing factor CFM9, mitochondrial","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"703ee685da9907be81112cb1e590678ca13268dd808170195484b12447e0ee1a","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MNQVFKGWSRGMSTSRGRSMRSKVESRMRKESGKTLREIRRAKKLKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGVNPEDPVAMASIHRVASTFFNAIDKKEGTPYVFHGDKQSERGTSVDNREESEPGDEDSDQEELDRFIAEIEEAADKEWEEEEAAEQEESGRIRYWNREEFAGRSRTPELRSYGDASHGFRRNDRDTHSQRRPNDSDDDDDDGELDSEDDEIPKRFDRARSSNTNTRRPREDFKRRSPDPRPRPRAQVRSDDDVLSDLDNTMWDSEDEEDAPPANYISSSDDDEDENRTVSASSSKQSRFRNNSSRDGINNSKSKSGKQRDEDWDSD","sequence_length":491,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"703ee685da9907be81112cb1e590678ca13268dd808170195484b12447e0ee1a","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/Q9LT57.json","taxon_id":"3702","uniprot_accession":"Q9LT57","uniprot_release":"2026_03"}],"pfam_id":"PF01985","short_name":"CRS1_YhbY","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}