{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF02001","protein_label":"UPF0251 protein Sputw3181_3483","reviewed":true,"short_name":"DUF134","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf134-pf02001.yaml","source_record_id":"Pfam:PF02001","source_record_label":"Protein of unknown function  DUF134","source_section":"canonical_examples","taxon_id":"NCBITaxon:351745","taxon_label":"Shewanella sp. (strain W3-18-1)","uniprot_accession":"A1RNQ0","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF02001","protein_label":"UPF0251 protein Cbei_2962","reviewed":true,"short_name":"DUF134","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf134-pf02001.yaml","source_record_id":"Pfam:PF02001","source_record_label":"Protein of unknown function  DUF134","source_section":"canonical_examples","taxon_id":"NCBITaxon:290402","taxon_label":"Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)","uniprot_accession":"A6LXM3","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF02001","protein_label":"UPF0251 protein CLI_1469","reviewed":true,"short_name":"DUF134","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf134-pf02001.yaml","source_record_id":"Pfam:PF02001","source_record_label":"Protein of unknown function  DUF134","source_section":"canonical_examples","taxon_id":"NCBITaxon:441772","taxon_label":"Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)","uniprot_accession":"A7GD74","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF02001","protein_label":"","reviewed":null,"short_name":"DUF134","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf134-pf02001.yaml","source_record_id":"Pfam:PF02001","source_record_label":"Protein of unknown function  DUF134","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":1492,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":3,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":1},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"This family of archaeal proteins has no known function. A study suggests that some members may be G-quadruplex binding proteins [[cite:PUB00098045]].","domain_architectures":4,"interpro_id":"IPR002852","known_evidence_count":null,"matches":1928,"name":"Protein of unknown function DUF134","partial_evidence_count":null,"pfam_id":"PF02001","proteins":1928,"proteomes":1555,"short_name":"DUF134","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF02001","structures":0,"taxa":3102,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF02001.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":1492,"domain_architectures":4,"matches":1928,"proteins":1928,"proteomes":1555,"structures":0,"taxa":3102},"curation_status":"SEEDED","description":"This family of archaeal proteins has no known function. A study suggests that some members may be G-quadruplex binding proteins [[cite:PUB00098045]].","id":"Pfam:PF02001","interpro_id":"InterPro:IPR002852","name":"Protein of unknown function DUF134","pfam_id":"PF02001","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF134","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF02001"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF02001.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"61fcf175bd5a8eb3febed1848e178d03988ebdcc72b25bd745eb1d4642020a2c"}},"protein_examples":{"candidate_count":3,"discovery_scanned":true,"example_count":3,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Shewanella sp. (strain W3-18-1)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf134-pf02001.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF02001","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf134-pf02001.yaml"}],"pfam_ids":["PF02001"],"protein_name":"UPF0251 protein Sputw3181_3483","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MARPKKCRQLSSCVPCSLFKPNGIPSVELTHIQLEADEFEALELGDVQRLSQLDAAALMGISRQTFGYLLASARKKVATAITQGEVLRLPSKTDKDLS","sequence_length":98,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"c94ad9385032f7faa246a052a439c2935a428963c795e364ff05048b157e6bfd","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/A1RNQ0.json","taxon_id":"351745","uniprot_accession":"A1RNQ0","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf134-pf02001.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF02001","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf134-pf02001.yaml"}],"pfam_ids":["PF02001"],"protein_name":"UPF0251 protein Cbei_2962","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MARPTKFRRVEFFPEDDYFVPCGKPKCQIEEIALKVEELEAMRLKDIEELNQEECAEKMQVSRQTFQNIIDSARKKVVTALTEGKAIRISGGHYTTKLCKFKCAECETIYEINYDQDRAVCPSCGSDKVMCNKKAGFCKNWCKGNNIE","sequence_length":148,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"6a180e38346b3699cd070cea336845791626331a4ac06a634e92e536446d0be4","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/A6LXM3.json","taxon_id":"290402","uniprot_accession":"A6LXM3","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf134-pf02001.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF02001","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf134-pf02001.yaml"}],"pfam_ids":["PF02001"],"protein_name":"UPF0251 protein CLI_1469","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MPRPTKFRRVEFFPENNYFVPWGKPKCEIHEVVLKVEELEAMRLKDIEELNQEQCAEKMEISRQTFQNIIDSARKKVAIALTEGKAIKISGGHYTTKLCKLKCIDCEEIYEINYEQDRHLCPNCGSEKVICNKKADFCRRWCKGQNRKEQYEESKNK","sequence_length":157,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"b7202e57422ab682b332e9ce63c11387bedf32c853ff6189556d4f0b153ef52c","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/A7GD74.json","taxon_id":"441772","uniprot_accession":"A7GD74","uniprot_release":"2026_03"}],"pfam_id":"PF02001","short_name":"DUF134","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
