{"cross_mech":[],"family":{"alphafold_models":11476,"candidate_reasons":["pfam_previous_unknown_name"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":0,"protein_traits_record":false,"records_by_mech":{},"scanned":false},"curation_status":"SEEDED","demotion_reasons":[],"description":"This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit [[cite:PUB00053910]]. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces. [[cite:PUB00021814]].","domain_architectures":17,"interpro_id":"IPR028989","known_evidence_count":null,"matches":17361,"name":"RimP N-terminal domain","partial_evidence_count":null,"pfam_id":"PF02576","proteins":17354,"proteomes":16898,"short_name":"RimP_N","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF02576","structures":13,"taxa":24395,"unknown_status":"EX_DUF"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF02576.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":11476,"domain_architectures":17,"matches":17361,"proteins":17354,"proteomes":16898,"structures":13,"taxa":24395},"curation_status":"SEEDED","description":"This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit [[cite:PUB00053910]]. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces. [[cite:PUB00021814]].","id":"Pfam:PF02576","interpro_id":"InterPro:IPR028989","name":"RimP N-terminal domain","pfam_id":"PF02576","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"EX_DUF","short_name":"RimP_N","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF02576"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF02576.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"62cd861a464e1ba4d6f9cc620dddf48e9be999ac9aade203d7302803c875a534"}},"protein_examples":{"candidate_count":2,"discovery_scanned":true,"example_count":2,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli (strain K12)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/ribosome-maturation-factor-rimp-nf000927.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF000927","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ribosome-maturation-factor-rimp-nf000927.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/cdd/bacillus-subtilis-yxls-like-c-terminal-domain-yxls-is-a-bacillus-subti-cd01734.yaml","qualification_status":"NOT_ASSESSED","record_id":"CDD:cd01734","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/bacillus-subtilis-yxls-like-c-terminal-domain-yxls-is-a-bacillus-subti-cd01734.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/ribosome-maturation-factor-rimp-c-terminal-ipr028998.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR028998","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ribosome-maturation-factor-rimp-c-terminal-ipr028998.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/ribosome-maturation-factor-rimp-n-terminal-ipr028989.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR028989","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ribosome-maturation-factor-rimp-n-terminal-ipr028989.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/rimp-c-pf17384.yaml","qualification_status":"NOT_ASSESSED","record_id":"Pfam:PF17384","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rimp-c-pf17384.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/rimp-n-pf02576.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF02576","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rimp-n-pf02576.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/ribosome-maturation-factor-rimp-c-terminal-domain-superfamily-ipr036847.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR036847","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ribosome-maturation-factor-rimp-c-terminal-domain-superfamily-ipr036847.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/rimp-n-terminal-domain-superfamily-ipr035956.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR035956","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/rimp-n-terminal-domain-superfamily-ipr035956.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/ribosome-maturation-factor-rimp-c-terminal-domain-2-30-30-180.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:2.30.30.180","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ribosome-maturation-factor-rimp-c-terminal-domain-2-30-30-180.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/rimp-like-superfamily-n-terminal-3-30-300-70.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.300.70","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/rimp-like-superfamily-n-terminal-3-30-300-70.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:P0A8A8","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF02576","PF17384"],"protein_name":"Ribosome maturation factor RimP","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"1cafc75395d4338392d6e3ca7d010efa55ae1e27c58ac574dedc975c21ae550f","sequence_version":2,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF","sequence_length":150,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"1cafc75395d4338392d6e3ca7d010efa55ae1e27c58ac574dedc975c21ae550f","sequence_version":2,"source_url":"https://rest.uniprot.org/uniprotkb/P0A8A8.json","taxon_id":"83333","uniprot_accession":"P0A8A8","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/ribosome-maturation-factor-rimp-nf000928.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF000928","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/ribosome-maturation-factor-rimp-nf000928.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/cdd/bacillus-subtilis-yxls-like-c-terminal-domain-yxls-is-a-bacillus-subti-cd01734.yaml","qualification_status":"NOT_ASSESSED","record_id":"CDD:cd01734","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/cdd/bacillus-subtilis-yxls-like-c-terminal-domain-yxls-is-a-bacillus-subti-cd01734.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/ribosome-maturation-factor-rimp-c-terminal-ipr028998.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR028998","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ribosome-maturation-factor-rimp-c-terminal-ipr028998.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/ribosome-maturation-factor-rimp-n-terminal-ipr028989.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR028989","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/ribosome-maturation-factor-rimp-n-terminal-ipr028989.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/rimp-c-pf17384.yaml","qualification_status":"NOT_ASSESSED","record_id":"Pfam:PF17384","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rimp-c-pf17384.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/rimp-n-pf02576.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF02576","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/rimp-n-pf02576.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/ribosome-maturation-factor-rimp-c-terminal-domain-superfamily-ipr036847.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR036847","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/ribosome-maturation-factor-rimp-c-terminal-domain-superfamily-ipr036847.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/rimp-n-terminal-domain-superfamily-ipr035956.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR035956","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/rimp-n-terminal-domain-superfamily-ipr035956.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/ribosome-maturation-factor-rimp-c-terminal-domain-2-30-30-180.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:2.30.30.180","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/ribosome-maturation-factor-rimp-c-terminal-domain-2-30-30-180.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/rimp-like-superfamily-n-terminal-3-30-300-70.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.300.70","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/rimp-like-superfamily-n-terminal-3-30-300-70.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:P32726","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF02576","PF17384"],"protein_name":"Ribosome maturation factor RimP","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"020735c28e4f79d1e2aa80df97f1dc13288e90666fa1b5149fce6ad1ff4853d1","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MSKKVTDTVQEMAQPIVDSLQLELVDIEFVKEGQSWFLRVFIDSDDGVDIEECAKVSEALSEKLDEADPISQNYFLEVSSPGAERPLKKKADFEKSLGKNVYIKTYEPIDGVKVFEGELAEFDGQTVTVEITIKTRKKRINIPYEKIANARLAVTF","sequence_length":156,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"020735c28e4f79d1e2aa80df97f1dc13288e90666fa1b5149fce6ad1ff4853d1","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P32726.json","taxon_id":"224308","uniprot_accession":"P32726","uniprot_release":"2026_03"}],"pfam_id":"PF02576","short_name":"RimP_N","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
