{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF03885","protein_label":"Uncharacterized protein YaaR","reviewed":true,"short_name":"DUF327","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf327-pf03885.yaml","source_record_id":"Pfam:PF03885","source_record_label":"Protein of unknown function (DUF327)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P37539","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF03885","protein_label":"","reviewed":null,"short_name":"DUF327","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf327-pf03885.yaml","source_record_id":"Pfam:PF03885","source_record_label":"Protein of unknown function (DUF327)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF03885","protein_label":"Uncharacterized protein YaaR","reviewed":true,"short_name":"DUF327","source_category":"sequence/homologous_superfamily/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/homologous_superfamily/interpro/tm1646-like-domain-superfamily-ipr024042.yaml","source_record_id":"InterPro:IPR024042","source_record_label":"TM1646-like domain superfamily","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P37539","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF03885","protein_label":"Uncharacterized protein YaaR","reviewed":true,"short_name":"DUF327","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/hypothetical-protein-tm1646-like-domain-1-20-120-490.yaml","source_record_id":"CATH:1.20.120.490","source_record_label":"Hypothetical protein TM1646-like domain","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P37539","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":1256,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":1,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":3},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"The proteins in this family are around 140-170 residues in length. The proteins contain many conserved residues. with the most conserved motifs found in the central and C-terminal region. The function of these proteins is unknown.","domain_architectures":4,"interpro_id":"IPR005585","known_evidence_count":null,"matches":1889,"name":"Protein of unknown function (DUF327)","partial_evidence_count":null,"pfam_id":"PF03885","proteins":1887,"proteomes":1868,"short_name":"DUF327","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF03885","structures":5,"taxa":2782,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF03885.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":1256,"domain_architectures":4,"matches":1889,"proteins":1887,"proteomes":1868,"structures":5,"taxa":2782},"curation_status":"SEEDED","description":"The proteins in this family are around 140-170 residues in length. The proteins contain many conserved residues. with the most conserved motifs found in the central and C-terminal region. The function of these proteins is unknown.","id":"Pfam:PF03885","interpro_id":"InterPro:IPR005585","name":"Protein of unknown function (DUF327)","pfam_id":"PF03885","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF327","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF03885"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF03885.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"463f8764665647a1bb5a0a8b1c4ebe8c8890dacafb24eb95b6047180186bf89d"}},"protein_examples":{"candidate_count":1,"discovery_scanned":true,"example_count":1,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf327-pf03885.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF03885","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf327-pf03885.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/tm1646-like-domain-superfamily-ipr024042.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR024042","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/tm1646-like-domain-superfamily-ipr024042.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/hypothetical-protein-tm1646-like-domain-1-20-120-490.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:1.20.120.490","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/hypothetical-protein-tm1646-like-domain-1-20-120-490.yaml"}],"pfam_ids":["PF03885"],"protein_name":"Uncharacterized protein YaaR","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MKINKDIRTFIDNKQIPSVKTSEITASFKTSMENQSSKMKLDQLTRLLSDIEAFGKRLTKSRNFKDLARFKGLVKRFVKEAVDSGLSHETSKSFDLYGNSRTLGLVKEIDDKLIQLTEEMMDQEKPAIDLLERIGEIKGLLINLYT","sequence_length":146,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"1ec75f605d507a5ffabef342af06227207e6b7eda11ee1600cc8ac17b5cd770f","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P37539.json","taxon_id":"224308","uniprot_accession":"P37539","uniprot_release":"2026_03"}],"pfam_id":"PF03885","short_name":"DUF327","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
