{"cross_mech":[],"family":{"alphafold_models":5066,"candidate_reasons":["pfam_previous_unknown_name"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":0,"protein_traits_record":false,"records_by_mech":{},"scanned":false},"curation_status":"SEEDED","demotion_reasons":[],"description":"ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide [[cite:PUB00075438]].","domain_architectures":11,"interpro_id":"IPR005586","known_evidence_count":null,"matches":8081,"name":"ABC-type transport auxiliary lipoprotein component","partial_evidence_count":null,"pfam_id":"PF03886","proteins":8077,"proteomes":5845,"short_name":"ABC_trans_aux","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF03886","structures":7,"taxa":8107,"unknown_status":"EX_DUF"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF03886.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":5066,"domain_architectures":11,"matches":8081,"proteins":8077,"proteomes":5845,"structures":7,"taxa":8107},"curation_status":"SEEDED","description":"ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide [[cite:PUB00075438]].","id":"Pfam:PF03886","interpro_id":"InterPro:IPR005586","name":"ABC-type transport auxiliary lipoprotein component","pfam_id":"PF03886","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"EX_DUF","short_name":"ABC_trans_aux","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF03886"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF03886.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"d2722b5c10d8ea95b212b6deea54a89abd0b97618c43aa7813fbdb3c96584ef3"}},"protein_examples":{"candidate_count":3,"discovery_scanned":true,"example_count":3,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli (strain K12)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/membrane-integrity-associated-transporter-subunit-pqic-nf033620.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF033620","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/membrane-integrity-associated-transporter-subunit-pqic-nf033620.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/abc-type-transport-auxiliary-lipoprotein-component-ipr005586.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR005586","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/abc-type-transport-auxiliary-lipoprotein-component-ipr005586.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/abc-trans-aux-pf03886.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF03886","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abc-trans-aux-pf03886.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/abc-type-transport-auxiliary-lipoprotein-component-3-40-50-10610.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.40.50.10610","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/abc-type-transport-auxiliary-lipoprotein-component-3-40-50-10610.yaml"}],"pfam_ids":["PF03886"],"protein_name":"Intermembrane transport lipoprotein PqiC","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKRLP","sequence_length":187,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"35163d0e13e4a150d298ccca639143caff776af6606f5cb9121d365dec99e9f6","sequence_version":2,"source_url":"https://rest.uniprot.org/uniprotkb/P0AB10.json","taxon_id":"83333","uniprot_accession":"P0AB10","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Shigella flexneri","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/abc-trans-aux-pf03886.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF03886","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abc-trans-aux-pf03886.yaml"}],"pfam_ids":["PF03886"],"protein_name":"Intermembrane transport lipoprotein PqiC","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKRLP","sequence_length":187,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"35163d0e13e4a150d298ccca639143caff776af6606f5cb9121d365dec99e9f6","sequence_version":2,"source_url":"https://rest.uniprot.org/uniprotkb/P0AB11.json","taxon_id":"623","uniprot_accession":"P0AB11","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/abc-trans-aux-pf03886.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF03886","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/abc-trans-aux-pf03886.yaml"}],"pfam_ids":["PF02470","PF03886"],"protein_name":"Uncharacterized protein bll6063","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"METRAPYVLIGTFVLAAILAVFGFIYWLNNTGGIGPRTNYHVQFQGPVPGLLVGAGVLFNGIRVGEVAQLGLAPDNPRFVNATISVASATPVRADTRVGLDFQGLTGVPVVTLEGGMIVAKSGEPLTLIAEAGAGQSMTQAARDALRRVDSVLEDNSGPLKDTIANFKTFSDGLARNTGKLDGILAGLEKMTGGGAPAQKITYDLRTPQNLGPAAKTLSASLAIPEPTAVAMLQTQRMLFAPVGDNPGFADFLWADSIPKLVQARLIDSFENYDIAHAPLRTSDLGQADYQLLIDIRRFRIATDGETRVEIGLSARIVDKNGKVVASRLVETSEKLDKVEPAAAVAAFDAAFARIAKELIGWTVLAV","sequence_length":367,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"af15fb67beb643217cf0b26923b039c106f371287259f0d8c2c76813635582e2","sequence_version":2,"source_url":"https://rest.uniprot.org/uniprotkb/P29285.json","taxon_id":"224911","uniprot_accession":"P29285","uniprot_release":"2026_03"}],"pfam_id":"PF03886","short_name":"ABC_trans_aux","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
