{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF04361","protein_label":"Protein Smg","reviewed":true,"short_name":"DUF494","source_category":"function/protein_family/ncbifam","source_mech":"ProteinTraitsMech","source_path":"data/traits/function/protein_family/ncbifam/duf494-family-protein-nf002897.yaml","source_record_id":"NCBIfam:NF002897","source_record_label":"DUF494 family protein","source_section":"canonical_examples","taxon_id":"NCBITaxon:83333","taxon_label":"Escherichia coli (strain K12)","uniprot_accession":"P0A828","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF04361","protein_label":"Protein Smg","reviewed":true,"short_name":"DUF494","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf494-pf04361.yaml","source_record_id":"Pfam:PF04361","source_record_label":"Protein of unknown function (DUF494)","source_section":"canonical_examples","taxon_id":"NCBITaxon:386656","taxon_label":"Yersinia pestis (strain Pestoides F)","uniprot_accession":"A4TH25","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF04361","protein_label":"Protein Smg homolog","reviewed":true,"short_name":"DUF494","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf494-pf04361.yaml","source_record_id":"Pfam:PF04361","source_record_label":"Protein of unknown function (DUF494)","source_section":"canonical_examples","taxon_id":"NCBITaxon:375286","taxon_label":"Janthinobacterium sp. (strain Marseille)","uniprot_accession":"A6SU83","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF04361","protein_label":"Protein Smg","reviewed":true,"short_name":"DUF494","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf494-pf04361.yaml","source_record_id":"Pfam:PF04361","source_record_label":"Protein of unknown function (DUF494)","source_section":"canonical_examples","taxon_id":"NCBITaxon:83333","taxon_label":"Escherichia coli (strain K12)","uniprot_accession":"P0A828","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF04361","protein_label":"","reviewed":null,"short_name":"DUF494","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf494-pf04361.yaml","source_record_id":"Pfam:PF04361","source_record_label":"Protein of unknown function (DUF494)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":1661,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":3,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":2},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"Members of this family of uncharacterised proteins are often named Smg.","domain_architectures":1,"interpro_id":"IPR007456","known_evidence_count":null,"matches":2454,"name":"Protein of unknown function (DUF494)","partial_evidence_count":null,"pfam_id":"PF04361","proteins":2454,"proteomes":2385,"short_name":"DUF494","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF04361","structures":0,"taxa":3503,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF04361.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":1661,"domain_architectures":1,"matches":2454,"proteins":2454,"proteomes":2385,"structures":0,"taxa":3503},"curation_status":"SEEDED","description":"Members of this family of uncharacterised proteins are often named Smg.","id":"Pfam:PF04361","interpro_id":"InterPro:IPR007456","name":"Protein of unknown function (DUF494)","pfam_id":"PF04361","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF494","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF04361"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF04361.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"8716bc1689eb74de02a1ece4afd183b2c2bb1f71a2e91e89c185211a369af076"}},"protein_examples":{"candidate_count":3,"discovery_scanned":true,"example_count":3,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Yersinia pestis (strain Pestoides F)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf494-pf04361.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF04361","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf494-pf04361.yaml"}],"pfam_ids":["PF04361"],"protein_name":"Protein Smg","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MFDVLIYLFETYMHNEPEMLVDQDKITDDLADAGFYREDINNALNWLEVLADLQEGQKAPYLYTADPQALRIYTVEECRRLGAACRGFILFLEQIQVLQFDAREMVIDRIMALDSPEIDLEDLKWVVLMVLFNIPGYENAYKQMEELLFEVNDGYLH","sequence_length":157,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"48c99c416b175469980d584f90291044948ecc2e03f21d93dd4a6ccb882ac8e1","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/A4TH25.json","taxon_id":"386656","uniprot_accession":"A4TH25","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Janthinobacterium sp. (strain Marseille)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf494-pf04361.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF04361","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf494-pf04361.yaml"}],"pfam_ids":["PF04361"],"protein_name":"Protein Smg homolog","registry_status":"NOT_IN_REGISTRY","reviewed":true,"sequence":"MFDVLVYLYETYYRPDACPDSEALVKKLSAIGFEEEEIAKALGWLTALAETTNELSDSYPHQTAFSFGIRIYATQEMDVLGTPAVGFIQFLESAKLINPVQREIVIERALAAGESPISLEKLKVIVLMVLWSQGKEPDGLIFDELFVDDEDAPPRMLH","sequence_length":158,"sequence_origin":"UNIPROT_FETCH","sequence_sha256":"7846aa537b65222ed4a481ba44602065fb7d8c264bf7752bec88384d92ad7762","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/A6SU83.json","taxon_id":"375286","uniprot_accession":"A6SU83","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Escherichia coli (strain K12)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/duf494-family-protein-nf002897.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF002897","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/duf494-family-protein-nf002897.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf494-pf04361.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF04361","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf494-pf04361.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:P0A828","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF04361"],"protein_name":"Protein Smg","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"99f0b5b29ddce79eb88dd2bfc7a68828f4b75feb48546ee21b756e19ec4e9f46","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MFDVLMYLFETYIHTEAELRVDQDKLEQDLTDAGFEREDIYNALLWLEKLADYQEGLAEPMQLASDPLSMRIYTPEECERLDASCRGFLLFLEQIQVLNLETREMVIERVLALDNAEFELDDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH","sequence_length":157,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"99f0b5b29ddce79eb88dd2bfc7a68828f4b75feb48546ee21b756e19ec4e9f46","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P0A828.json","taxon_id":"83333","uniprot_accession":"P0A828","uniprot_release":"2026_03"}],"pfam_id":"PF04361","short_name":"DUF494","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
