{"cross_mech":[],"family":{"alphafold_models":1204,"candidate_reasons":["pfam_previous_unknown_name"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":0,"protein_traits_record":false,"records_by_mech":{},"scanned":false},"curation_status":"SEEDED","demotion_reasons":[],"description":"Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules.","domain_architectures":10,"interpro_id":"IPR007508","known_evidence_count":null,"matches":1417,"name":"D-aminoacyl-tRNA deacylase","partial_evidence_count":null,"pfam_id":"PF04414","proteins":1386,"proteomes":958,"short_name":"tRNA_deacylase","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF04414","structures":2,"taxa":2187,"unknown_status":"EX_DUF"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF04414.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":1204,"domain_architectures":10,"matches":1417,"proteins":1386,"proteomes":958,"structures":2,"taxa":2187},"curation_status":"SEEDED","description":"Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules.","id":"Pfam:PF04414","interpro_id":"InterPro:IPR007508","name":"D-aminoacyl-tRNA deacylase","pfam_id":"PF04414","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"EX_DUF","short_name":"tRNA_deacylase","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF04414"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF04414.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"ccb16adbc477ec13b50dcb93b4979ee3e044b8dd4917731b412815ae076108b3"}},"protein_examples":{"candidate_count":2,"discovery_scanned":true,"example_count":2,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/molecular_function/go/d-aminoacyl-trna-deacylase-activity-go0051499.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0051499","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/d-aminoacyl-trna-deacylase-activity-go0051499.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/molecular_function/go/gly-trna-ala-deacylase-activity-go0106026.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0106026","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/gly-trna-ala-deacylase-activity-go0106026.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/pathway/go/d-amino-acid-catabolic-process-go0019478.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0019478","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/pathway/go/d-amino-acid-catabolic-process-go0019478.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/protein_family/ncbifam/d-aminoacyl-trna-deacylase-nf003071.yaml","qualification_status":"NOT_ASSESSED","record_id":"NCBIfam:NF003071","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/protein_family/ncbifam/d-aminoacyl-trna-deacylase-nf003071.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/trna-deacylase-pf04414.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF04414","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/trna-deacylase-pf04414.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/af0625-like-3-40-50-10700.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.40.50.10700","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/af0625-like-3-40-50-10700.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/af0625-like-3-40-630-50.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.40.630.50","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/af0625-like-3-40-630-50.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:Q57630","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF04414"],"protein_name":"D-aminoacyl-tRNA deacylase","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"d2ffd74ea59f54c3ff78dee2ff2e36b77379617ed318015aefecf7bec8acbf9a","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MKFLLIASNKDLASKNIANHIKEYFDVFETDKELLSLTAEDLEYADYYIFLSKHKSIANKPSLTVHTPGNLTEDNTFGGNPKEVCPCDAVLNTLLLKNIYKNYKTYYEDGKIGEFDVSFEVVHHSPTGLKAPTVFVEIGSSEKEWILKEAGEIIAKSVLETIDAMKSKNYDKKVRAIGFGGGHYAPKFTKLALEDKYYFGYLVPKYASVSEDVLNQLISKMEVDKALIDWKGCRGDDKRRYIEFFENNGIEWERV","sequence_length":255,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"d2ffd74ea59f54c3ff78dee2ff2e36b77379617ed318015aefecf7bec8acbf9a","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/Q57630.json","taxon_id":"243232","uniprot_accession":"Q57630","uniprot_release":"2026_03"},{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Arabidopsis thaliana","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/molecular_function/go/d-aminoacyl-trna-deacylase-activity-go0051499.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0051499","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/d-aminoacyl-trna-deacylase-activity-go0051499.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/function/molecular_function/go/gly-trna-ala-deacylase-activity-go0106026.yaml","qualification_status":"NOT_ASSESSED","record_id":"GO:0106026","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/function/molecular_function/go/gly-trna-ala-deacylase-activity-go0106026.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/trna-deacylase-pf04414.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF04414","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/trna-deacylase-pf04414.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/af0625-like-3-40-50-10700.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.40.50.10700","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/af0625-like-3-40-50-10700.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/af0625-like-3-40-630-50.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.40.630.50","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/af0625-like-3-40-630-50.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:Q9ZPQ3","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF04414"],"protein_name":"D-aminoacyl-tRNA deacylase","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"a773b3aa95490e1710ce004196d915596fef858f6bae7d789108b640cf5b2001","sequence_version":2,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MVTLIVATTADPASINPAAALLAMPGWTAGPILPPDIKSFSNKQTRVIQHDRSIVKEDDLDLRWEEATGEVVDEVIFLSRHTAVSNRPALTVHPIGVLHLKDGESPPQGGKPGWAALPSTRIGPWFRLLKKMAEAHGLVPEFEITLEATHHGPITNKPTMFLEIGSTEEYWKRQDAAQVMALLMWEGLGLGGSEEVGKWKSETGKRKVLLGIGGGHYAPRHMDIALKDDIWVGHLLSGYSLPMEDPTQTKTTPGENYIGGNWRQSIKAAFEATKASFPGGEILAHLDHKSFKGWQKKAITEFLAEESINVGKPNDFT","sequence_length":317,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"a773b3aa95490e1710ce004196d915596fef858f6bae7d789108b640cf5b2001","sequence_version":2,"source_url":"https://rest.uniprot.org/uniprotkb/Q9ZPQ3.json","taxon_id":"3702","uniprot_accession":"Q9ZPQ3","uniprot_release":"2026_03"}],"pfam_id":"PF04414","short_name":"tRNA_deacylase","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
