{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF04456","protein_label":"Uncharacterized protein YlxP","reviewed":true,"short_name":"DUF503","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf503-pf04456.yaml","source_record_id":"Pfam:PF04456","source_record_label":"Protein of unknown function (DUF503)","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P32730","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF04456","protein_label":"","reviewed":null,"short_name":"DUF503","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf503-pf04456.yaml","source_record_id":"Pfam:PF04456","source_record_label":"Protein of unknown function (DUF503)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF04456","protein_label":"Uncharacterized protein YlxP","reviewed":true,"short_name":"DUF503","source_category":"sequence/homologous_superfamily/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/homologous_superfamily/interpro/tt1725-like-superfamily-ipr036746.yaml","source_record_id":"InterPro:IPR036746","source_record_label":"TT1725-like superfamily","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P32730","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF04456","protein_label":"Uncharacterized protein YlxP","reviewed":true,"short_name":"DUF503","source_category":"structure/homologous_superfamily/cath","source_mech":"ProteinTraitsMech","source_path":"data/traits/structure/homologous_superfamily/cath/tt1725-like-3-30-70-1120.yaml","source_record_id":"CATH:3.30.70.1120","source_record_label":"TT1725-like","source_section":"canonical_examples","taxon_id":"NCBITaxon:224308","taxon_label":"Bacillus subtilis (strain 168)","uniprot_accession":"P32730","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":2909,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":1,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":3},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"Family of hypothetical bacterial proteins.","domain_architectures":5,"interpro_id":"IPR007546","known_evidence_count":null,"matches":4622,"name":"Protein of unknown function (DUF503)","partial_evidence_count":null,"pfam_id":"PF04456","proteins":4622,"proteomes":4588,"short_name":"DUF503","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF04456","structures":1,"taxa":6558,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF04456.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":2909,"domain_architectures":5,"matches":4622,"proteins":4622,"proteomes":4588,"structures":1,"taxa":6558},"curation_status":"SEEDED","description":"Family of hypothetical bacterial proteins.","id":"Pfam:PF04456","interpro_id":"InterPro:IPR007546","name":"Protein of unknown function (DUF503)","pfam_id":"PF04456","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF503","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF04456"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF04456.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"faff91132226c4286d0b81d274ff86ac829b0b08bff8c15c5d60faecdef71e21"}},"protein_examples":{"candidate_count":1,"discovery_scanned":true,"example_count":1,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Bacillus subtilis (strain 168)","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf503-pf04456.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF04456","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf503-pf04456.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/homologous_superfamily/interpro/tt1725-like-superfamily-ipr036746.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR036746","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/homologous_superfamily/interpro/tt1725-like-superfamily-ipr036746.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/structure/homologous_superfamily/cath/tt1725-like-3-30-70-1120.yaml","qualification_status":"NOT_ASSESSED","record_id":"CATH:3.30.70.1120","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/structure/homologous_superfamily/cath/tt1725-like-3-30-70-1120.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:P32730","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF04456"],"protein_name":"Uncharacterized protein YlxP","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"0132c3120a08cd6042c8b22fb7fef83cd94956c82e2281cc76f9d6001da4d2c5","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MIGFAECECIIYDAGSLKEKRAVLKRILTRVQNKFNVSISEIGYQDTWQRTSFGIAAVSSSRVQTEKELQRVLAFIDSFPEIERTITRTEWF","sequence_length":92,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"0132c3120a08cd6042c8b22fb7fef83cd94956c82e2281cc76f9d6001da4d2c5","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/P32730.json","taxon_id":"224308","uniprot_accession":"P32730","uniprot_release":"2026_03"}],"pfam_id":"PF04456","short_name":"DUF503","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
