{"cross_mech":[{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF04859","protein_label":"Protein GRAVITROPIC IN THE LIGHT 1","reviewed":true,"short_name":"DUF641","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf641-plant-ipr006943.yaml","source_record_id":"InterPro:IPR006943","source_record_label":"Domain of unknown function DUF641, plant","source_section":"canonical_examples","taxon_id":"NCBITaxon:3702","taxon_label":"Arabidopsis thaliana","uniprot_accession":"F4KGE8","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF04859","protein_label":"","reviewed":null,"short_name":"DUF641","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf641-plant-ipr006943.yaml","source_record_id":"InterPro:IPR006943","source_record_label":"Domain of unknown function DUF641, plant","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF04859","protein_label":"Protein GRAVITROPIC IN THE LIGHT 1","reviewed":true,"short_name":"DUF641","source_category":"sequence/domain/interpro","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/interpro/gil1-irki-c-terminal-domain-ipr056813.yaml","source_record_id":"InterPro:IPR056813","source_record_label":"GIL1/IRKI, C-terminal domain","source_section":"canonical_examples","taxon_id":"NCBITaxon:3702","taxon_label":"Arabidopsis thaliana","uniprot_accession":"F4KGE8","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":false,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF04859","protein_label":"Protein GRAVITROPIC IN THE LIGHT 1","reviewed":true,"short_name":"DUF641","source_category":"sequence/domain/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/domain/pfam/gil1-irki-c-pf24994.yaml","source_record_id":"Pfam:PF24994","source_record_label":"GIL1/IRKI C-terminal domain","source_section":"canonical_examples","taxon_id":"NCBITaxon:3702","taxon_label":"Arabidopsis thaliana","uniprot_accession":"F4KGE8","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":true,"link_basis":["canonical_example_family_classification"],"pfam_id":"PF04859","protein_label":"Protein GRAVITROPIC IN THE LIGHT 1","reviewed":true,"short_name":"DUF641","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf641-pf04859.yaml","source_record_id":"Pfam:PF04859","source_record_label":"Plant protein of unknown function (DUF641)","source_section":"canonical_examples","taxon_id":"NCBITaxon:3702","taxon_label":"Arabidopsis thaliana","uniprot_accession":"F4KGE8","unknown_status":"UNKNOWN_CANDIDATE"},{"cited_uniprot_accession":"","family_mentioned_in_record":null,"link_basis":["trait_identifier"],"pfam_id":"PF04859","protein_label":"","reviewed":null,"short_name":"DUF641","source_category":"sequence/family/pfam","source_mech":"ProteinTraitsMech","source_path":"data/traits/sequence/family/pfam/duf641-pf04859.yaml","source_record_id":"Pfam:PF04859","source_record_label":"Plant protein of unknown function (DUF641)","source_section":"trait_identifier","taxon_id":"","taxon_label":"","uniprot_accession":"","unknown_status":"UNKNOWN_CANDIDATE"}],"family":{"alphafold_models":2876,"candidate_reasons":["short_name_matches_duf","name_says_unknown_function","description_says_unknown_function"],"characterization_status":"","context_evidence_count":null,"cross_mech":{"example_proteins":1,"protein_traits_record":true,"records_by_mech":{"ProteinTraitsMech":4},"scanned":true},"curation_status":"SEEDED","demotion_reasons":[],"description":"Plant protein of unknown function.","domain_architectures":57,"interpro_id":"IPR006943","known_evidence_count":null,"matches":3547,"name":"Plant protein of unknown function (DUF641)","partial_evidence_count":null,"pfam_id":"PF04859","proteins":3537,"proteomes":369,"short_name":"DUF641","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF04859","structures":0,"taxa":998,"unknown_status":"UNKNOWN_CANDIDATE"},"inputs":{"cross_mech":"cross-mech-duf-examples-2026-10-10","members":"pfam-uniprot-uniref90-2026-10-07","protein_examples":"duf-protein-examples-2026-10-13","worklist":"interpro-pfam-duf-2026-10-10"},"members":[],"metadata":{"curation_status":"SEEDED","local_source":"source/data/families/PF04859.yaml","record":{"characterization_status":"UNSCORED","counters":{"alphafold_models":2876,"domain_architectures":57,"matches":3547,"proteins":3537,"proteomes":369,"structures":0,"taxa":998},"curation_status":"SEEDED","description":"Plant protein of unknown function.","id":"Pfam:PF04859","interpro_id":"InterPro:IPR006943","name":"Plant protein of unknown function (DUF641)","pfam_id":"PF04859","provenance":{"generated_at":"2026-10-10T07:44:21.614711Z","path":"data/worklists/interpro-pfam-duf-2026-10-10.json","sha256":"17fb625876c9326ed284263a47bcd84e0d7844a31c040dc06cd2260c36f1c383","snapshot_id":"interpro-pfam-duf-2026-10-10","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/"},"seed_status":"UNKNOWN_CANDIDATE","short_name":"DUF641","source_url":"https://www.ebi.ac.uk/interpro/api/entry/pfam/PF04859"},"source":{"commit":"c8155abfcf881ad8662936343deb81e604e3a194","path":"data/families/PF04859.yaml","repository":"https://github.com/CultureBotAI/DUFMech","sha256":"c3d8439bc38e593ebad8fb463a2d6a549ef431429084fd2972d47bca81579cbd"}},"protein_examples":{"candidate_count":1,"discovery_scanned":true,"example_count":1,"examples":[{"evidence_scope":"FAMILY_MEMBERSHIP_NOT_FUNCTION","organism":"Arabidopsis thaliana","origins":[{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/domain-of-unknown-function-duf641-plant-ipr006943.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR006943","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/domain-of-unknown-function-duf641-plant-ipr006943.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/interpro/gil1-irki-c-terminal-domain-ipr056813.yaml","qualification_status":"NOT_ASSESSED","record_id":"InterPro:IPR056813","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/interpro/gil1-irki-c-terminal-domain-ipr056813.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/domain/pfam/gil1-irki-c-pf24994.yaml","qualification_status":"NOT_ASSESSED","record_id":"Pfam:PF24994","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/domain/pfam/gil1-irki-c-pf24994.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["canonical_example_family_classification","ptm_own_pfam_record_example"],"mech":"ProteinTraitsMech","path":"data/traits/sequence/family/pfam/duf641-pf04859.yaml","qualification_status":"LEGACY_OR_UNSPECIFIED","record_id":"Pfam:PF04859","section":"canonical_examples","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/traits/sequence/family/pfam/duf641-pf04859.yaml"},{"cited_uniprot_accession":"","commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","link_basis":["ptm_registry_exact_uniprot_pfam_xref"],"mech":"ProteinTraitsMech","path":"data/grounding/protein_registry.jsonl","qualification_status":"NOT_ASSESSED_FOR_THIS_FAMILY","record_id":"UniProtKB:F4KGE8","section":"protein_registry","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"}],"pfam_ids":["PF04859","PF24994"],"protein_name":"Protein GRAVITROPIC IN THE LIGHT 1","registry_source":{"commit":"70edd6f8458845f7d7783ac4f416df519f5e1de6","path":"data/grounding/protein_registry.jsonl","repository":"https://github.com/CultureBotAI/proteintraitsmech","sequence_sha256":"85fde133951d3e434792994b56df36c6e30f7ba986ed9a5bb5692924c41f4fa0","sequence_version":1,"sha256":"1be0cf02b76b03a8fe9b80bcead9cd4a419157116eb8da038f266bcc33015eb9","uniprot_release":"2026_03","url":"https://github.com/CultureBotAI/proteintraitsmech/blob/70edd6f8458845f7d7783ac4f416df519f5e1de6/data/grounding/protein_registry.jsonl"},"registry_status":"EXACT_SEQUENCE_VERSION_MATCH","reviewed":true,"sequence":"MLPGILLCSLNPRNHSKKKKSERESLETEPKDIDYWYSVQFNRDPPRFALKSENNNHHSRSKSGGDFCKKKKRGEMANKVSNFSDLIQRVTASCLLHPLSAGRQDLAVNRREEYDTEEEENEEEGEIQYEDALEKENGKDETIRAKNGRNGVSVETVQEMEMVMDEVFTAAAAMKRAYVALQEAHSPWDPEKMHDADMAMVAELRRIGSLRERFRRMRGTGSGGRRKNDAGRGMLREAVAPYEAVVKELKKEVKVKDTEIENLKEKVKVASMANGNGGKKHRLLSSRKVNCTTQIAVSPVPELFEMTMIQVKEASKSFTGILLSLMRAAHWDIAAAVRSIEAASASSDGMSASSFASSVQSSVPNQHAKFALESYICRKIFQGFDHETFYMDGSLSSLINPDQYRRDCFAQFKDMKAMDPMELLGILPTCHFGKFCSKKYLSIIHQKMEESLFGDSEQRELVVAGNHPRSQFYGEFLGLAKAVWLLHLLAFSLDPSPSHFEANRGAEFHSQYMESVVRFSDGRVPAGQVVGFPVCPGFKLSHQGKGSIIKSRVYLVPRA","sequence_length":559,"sequence_origin":"PTM_REGISTRY_MIRROR","sequence_sha256":"85fde133951d3e434792994b56df36c6e30f7ba986ed9a5bb5692924c41f4fa0","sequence_version":1,"source_url":"https://rest.uniprot.org/uniprotkb/F4KGE8.json","taxon_id":"3702","uniprot_accession":"F4KGE8","uniprot_release":"2026_03"}],"pfam_id":"PF04859","short_name":"DUF641","status":"HAS_SEQUENCE_EXAMPLE","unresolved":[]}}
